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Updated July 2008 Section 13

Phenotype MicroArrays  

10418 Visualization of Growth Curve Data from Phenotype Microarray Experiments,, J.S. Jacobsen, D.C. Joyner, S.E. Borglin, T.C. Hazen, A.P. Arkin, E.W. Bethel, 11th International Conference on Information Visualization (IV07), Zurich, Switzerland, July 4-6, 2007, Published by the IEEE Computer Society. 
10417 Response of Desulfovibrio vulgaris to alkaline stress, S. Stolyar, Q. He, M.P. Joachimiak, Z. He, Z.K. Yang, S.E. Borglin, D.C. Joyner, K. Huang, E. Alm, T.C. Hazen, J. Zhou, J.D. Wall, A.P. Arkin, D.A. Stahl, 2007, J. Bacteriol., v.189, pp. 8944-8952. 
10416 Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough, K.S. Bender, H-C Yen, C.L. Hemme, Z. Yang, Z. He, Q. He, J. Zhou, K.H. Huang, E.J. Alm, T.C. Hazen, A.P. Arkin, J.D. Wall, 2007, Appl. Environ. Microbiol., v.73, pp. 5389-5400. 
10415 Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe (III)-NTA, Y.J. Tang, R. Chakraborty, H. García Martín, J. Chu, T.C. Hazen, J.D. Keasling, 2007, Appl. Environ. Microbiol., v.73, pp. 3859-3864. 
10414 Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough, A. Mukhopadhyay, A.M. Redding, M.P. Joachimiak, A.P. Arkin, S.E. Borglin, P.S. Dehal, R. Chakraborty, J.T. Geller, T.C. Hazen, D.C. Joyner, V.J.J. Martin, J.D. Wall, Z.K. Yank, J. Zhou, J.D. Keasling, J. Bacteriol., v.189, pp. 5996-6010. 
10413 Pathway confirmation and flux analysis using 13C isotopic labeling of metabolites in Desulfovibrio vulgaris Hildenborough via FT-ICR Mass Spectrometry, Y. Tang, F. Pingitore, A. Mukhopadhyay, R. Phan, T.C. Hazen, J.D. Keasling, 2007, J. Bacteriol., v.189, pp. 940-949. 
10412 Study of Nitrate Stress in Desulfovibrio vulgaris Hildenborough Using iTRAQ Proteomics, A.M. Redding, A. Mukhopadhyay, D. Joyner, T.C. Hazen, J.D. Keasling, 2006, Briefings in Functional Genomics and Proteomics, v.5, pp. 133-143. 
10411 Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough inferred from global transcriptional analysis, Q. He, K.H. Huang, Z. He, E.J. Alm, M.W. Fields, T.C. Hazen, A.P. Arkin, J.D. Wall, J. Zhou, 2006, Appl. Environ. Microbiol, v.72, pp. 4370-4381. 
10410 Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach, A. Mukhopadhyay, Z. He, E.J. Alm, A.P. Arkin, E.E. Baidoo, S.C. Borglin, W. Chen, T.C. Hazen, Q. He, H.-Y. Holman, K. Huang, R. Huang, D.C. Joyner, N. Katz, M. Keller, P. Oeller, A. Redding, J. Sun, Z. Yang, J.D. Wall, J. Wei, H.-C. Yen, J. Zhou, J.D. Keasling, J. Bacteriol, v.188, pp. 4068-4078. 
10409 The global ppGpp-mediated stringent response to amino acid starvation in Escherichia coli, M.F. Traxler, S.M. Summers, H-T Nguyen, V. M. Zacharia, G.A. Hightower, J.T. Smith, T. Conway, Molecular Microbiology, v.68, pp. 1128-1148. 
10408 Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa, M.A. Oberhardt, J. Puchalka, K.E. Fryer, V.A. Martins dos Santos, J.A. Papin, Bacteriol., v.190, pp. 2790-2803. 
10407 Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine, A.J. Fabich, S.A. Jones, F.Z. Chowdhury, et al., Infect. Immun., v.76, pp. 1143-1152. 
10406 Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities, P.A. Venail, R.C. MacLean, T. Bouvier, M.A. Brockhurst, M.E. Hochberg, N. Mouquet, Nature, v.452, pp. 210-214. 
10405 Photostimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress, M.A. Friedl, M. Schmoll, C.P. Kubicek, I.S. Druzhinina, Microbiology, 2008, v.154, pp. 1229-1241. 
10404 Carbon source dependence and photostimulation of conidiation in Hypocrea atroviridis, M.A. Friedl, C.P. Kubicek, I.S. Druzhinina, Appl. Environ. Microbial., 2008, v.74, pp. 245-250. 
10403 A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information., A.M. Feist, C.S. Henry, J.L. Reed, M. Krummenacker, A.R. Joyce, P.D. Karp, L.J. Broadbelt, V. Hatzimanikatis, B.O. Palsson, Mol. Syst. Biol., 2007, v.3, p. 121. 
10402 Beta-D-Allose inhibits fruiting body formation and sporulation in Myxococcus xanthus, M. Chavira, N. Cao, K. Le, T. Riar, N. Moradshahi, M. McBride, R. Lux, W. Shi, J. Bacteriol., 2007, v.189, pp. 169-178. 
10401 Application of DNA bar codes for screening of industrially important fungi: the haplotype of Trichoderma harzianum sensu stricto indicates superior chitinase formation., V. Nagy, V. Seidl, G. Szakacs, M. Komon-Zelazowska, C.P. Kubicek, I.S. Druzhinina, Appl. Environ. Microbiol., 2007, v.73, pp. 7048-7058. 
10400 Exploring Genotypic and Phenotypic Diversity of Microbes Using Microarray Approaches, A. Mukherjee, S.A. Jackson, J.E. LeClerc, T.A. Cebula, Toxicology Mechanisms and Methods, 2006, v.16, pp. 121-128. 
10399 Global carbon utilization profiles of wild-type, mutant, and transformant strains of Hypocrea jecorina, I.S. Druzhinina, M. Schmoll, B. Seiboth, C.P. Kubicek, Appl. Environ. Microbiol., 2006, v.72, pp. 2126-2133. 
10398 Carbon source utilization by the marine Dendryphiella species D. arenaria and D. salina, T.E. dela Cruz, B.E. Schulz, C.P. Kubicek, I.S. Druzhinina, FEMS Microbial Ecol., 2006, v.58, pp. 343-353. 
10397 H-NS controls metabolism and stress tolerance in Escherichia coli O157:H7 that influence mouse passage, I. Erol, K-C Jeong, D.J. Baumler, B. Vykhodets, S-H Choi, C.W. Kaspar , BMC Microbiology, 2006, v.6. 
10396 A Screening system for carbon sources enhancing beta-N-acetylglucosaminidase formation in Hypocrea atroviridis (Trichoderma atroviride), V. Seidl, IS Druzhinina, C.P. Kubiceka, Microbiology, 2006, v.152, pp. 2003-2012. 
10395 Altered Utilization of N-Acetyl-D-Galactosamine by Escherichia coli O157:H7 from the 2006 Spinach Outbreak, A. Mukherjee, M. K. Mammel, J. E. LeClerc, T. A. Cebula, Journal of Bacteriology, 2008, v.190, pp. 1710-1717. 
10394 Uncovering New Metabolic Capabilities of Bacillus subtilis Using Phenotype Profiling of Rifampin-Resistant rpoB Mutants, A. E. Perkins, W. L. Nicholson, Journal of Bacteriology, 2008, v.190, pp. 807-814. 
10393 Carbon Source Dependence and Photostimulation of Conidiation in Hypocrea atroviridis, M. A. Friedl, C. P. Kubicek, I. S. Druzhinina, Applied and Environmental Microbiology, 2008, v.74, pp. 245-250. 
10392 Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1, M. A. Oberhardt, J. Puchalka, K. E. Fryer, V. A. P. Martins dos Santos, J. A. Papin, Journal of Bacteriology, v.190, pp. 2790-2803. 
10391 Dual Involvement of CbrAB and NtrBC in the Regulation of Histidine Utlization in Pseudomonas fluorescens SBW25, X.-X. Zhang, P. B. Rainey, Genetics, 2008, v.190, pp. 185-195. 
10390 A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information, A. M. Feist, C. S. Henry, J. L. Reed, M. Krummenacker, A. R. Joyce, P. D. Karp, L. J. Broadbelt, V. Hatzimanikatis, B. Paisson, Molecular Systems Biology 3, 2007.
10389 Regulatory Overlap and Functional Redundancy among Bacillus subtilis Extracytoplasmic Function σ Factors, T. Mascher, A.-B. Hachmann, J. D. Helmann, Journal of Bacteriology, 2007, v.189, pp. 7500-7511.
10388 Pseudomonas syringae pv. tomato DC3000 Uses Constitutive and Apoplast-Induced Nutrient Assimilation Pathways to Catabolize Nutrients That Are Abundant in the Tomato Apoplast, A. Rico, G. M. Preston, MPMI, 2008, v.21, pp. 269-282.
10387 Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data, Y. K. Oh, B. O. Palsson, S. M. Park, C. H. Schilling, R. Mahadevan, J. Biol. Chem., v.282, pp. 28791-28799.
10386 Genomic and Phenotypic Diversity of Coastal Vibrio cholerae Strains Is Linked to Environmental Factors,  D. P. Keymer, M. C. Miller, G. K. Schoolnik, A. B. Boehm, Applied and Environmental Microbiology, 2007, v.73, pp. 3705-3714.
10385 Metabolic capacity of Bacillus cereus strains ATCC 14579 and ATCC 10987 interlinked with comparative genomics, M. Mols, M. de Been, M. H. Zwietering, R. Moezelaar, T. Abee, Environmental Microbiology, 2007,  pp. 2933-2944. 
10384 Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25, J. Jones, D.J. Studholme, C.G. Knight, G.M. Preston, Environmental Microbiology, 2007, pp. 3046-3064.
10383 Genetic Analysis of a Novel Pathway for D-Xylose Metabolism in Caulobacter crescentus, C. Stephens, B. Christen, T. Fuchs, V. Sundaram, K. Watanabe, U. Jenal, Journal of Bacteriology, 2007, v.189, pp. 2181-2185.
10382 Visualization of Growth Curve Data from Phenotype Microarray Experiments, J. S. Jacobsen, D. C. Joyner, S. E. Borglin, T. C. Hazen, A. P. Arkin, E. W. Bethel, 11th International Conference Information Visualization (IV ’07), 2007.
10381 Contribution of Target Gene Mutations and Efflux to Decreased Susceptibility of Salmonella enterica Serovar Typhimurium to Fluoroquinolones and Other Antimicrobials, S. Chen, S. Cui, P. F. McDermott, S. Zhao, D. G. White, I. Paulsen, J. Meng, Antimicrobial Agents and Chemotherapy, 2007, v.51,pp. 535-542.
10380 Cryptococcus neoformans α Strains Preferentially Disseminate to the Central Nervous System during Coinfection, K. Nielsen, G. M. Cox, A. P. Litvintseva, E. Mylonakis, S. Malliaris, D. K. Benjamin, Jr., S. S. Giles, T. G. Mitchell, A. Casadevall, J. R. Perfect, J. Heitman, Infection and Immunity, 2005, v.73, pp. 4922-4933.
10379Regulation of Carbon and Nitrogen Utilization by CbrAB and NtrBC Two-Component Systems in Pseudomonas aeruginosa, W. Li, C-D. Lu, Journal of Bacteriology, 2007, v.189, pp. 5413-5420.
10378Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons, C.D. Miller, R. Child, J.E. Hughes, M. Benscai, P.P. Der, R.C. Sims, A.J. Anderson, Journal for Applied Microbiology, v.102, pp. 1612-1624.
10377Characterization of Chromate-Resistant and – Reducing Bacteria by Traditional Means and by a High-Throughput Phenomic Technique for Bioremediation Purposes, C. Viti, F. Decorosi, E. Tatti, L. Giovannetti, Biotechnol Prog., 2007, v.23, pp. 553-559.
10376Growth Characteristics of Microorganisms on Commercially Available Animal-free Alternatives to Tryptic Soy Medium, D. Cleland, K. Jastrzembski, E. Stamenova, J. Benson, C. Catranis, D. Emerson, B. Beck, Journal of Microbiological Methods, 2007, v.69, pp.345-352.
10375Escherichia coli enzyme IIANtr Regulates the K+ Transporter TrkA, C-R. Lee, S-H. Cho, M-J. Yoon,A. Peterkofsky, Y-J. Seok, 2007, The National Academy of Sciences of the USA, 2007.
10374 A Previously Undescribed Pathway for Pyrimidine Catabolism, K.D. Loh, P. Gyaneshwar, E.M. Papadimitriou, R. Fong, K-S. Kim, R. Parales, Z. Zhou, W. Inwood, and S. Kustu, Proceedings of the National Academy of Sciences, 2006, v.103, pp. 5114-5119.
10373FhuA and HgbA, Outer Membrane Proteins of Actinobacillus pleuropneumoniae: Their Role as Virulence Determinants, L. Shakarji, L.G. Mikael, R. Srikumar, M. Kobisch, J.W. Coulton, and M. Jacques, Canadian Journal of Microbiology, 2006, v.52, pp. 391-396.
10372 Phenotype MicroArray Analysis of Yeast Strains, B. Bochner, Abstract from the International Wine Microbiology Symposium, 2006.
10371 Phenotype MicroArrays that Assay the Energy Producing Pathways Active in Cells, B. Bochner, Abstract from the IBC Conference on Metabolic Syndrome, 2006.
10370Global Carbon Utilization Profiles of Wild-Type, Mutant, and Transformant Strains of Hypocrea jecorina, I.S. Druzhinina, M. Schmoll, B. Seiboth, and C.P. Kubicek, Applied and Environmental Microbiology, 2006, v.72, pp. 2126-2133.
10369Yeast as a Drug Discovery Platform in Huntington's and Parkinson's Diseases, T.F. Outeiro and F. Giorgini, Biotechnology Journal, 2006, v.1, pp. 1-12.
10368 Cell Scenario a New Look at Microarrays, C. Potera, Environmental Health Perspectives, 2006, v.114, pp. A-172-A175.
10367 Biolog Advances Global Cell Analysis Scans, C. Potera, Genetic Engineering News, 2006, v.26, pp. 24-25.
10366 Development of Phenotype MicroArrays for Measuring Energy Producing Pathways in Mammalian Cells, L.A. Wiater, M. Siri, R. Huang, and B.R. Bochner, Poster presented at Cambridge Healthtech Institute's 13th International Molecular Medicine Tri-Conference, February 2006 and The Federation of American Societies for Experimental Biology, April 2006.
10365Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis, C.A. Morales, S. Porwollik, J.G. Frye, H. Kinde, and M. McClelland, Applied and Environmental Microbiology, 2005, v.71, pp. 4388-4399.
10364A selC-Associated Genomic Island of the Extraintestinal Avian Pathogenic Escherichia coli Strain BEN2908 is Involved in Carbohydrate Uptake and Virulence, I. Chouikha, P. Germon, A. Brée, P. Gilot, M. Moulin-Schouleur, and C. Schouler, Journal of Bacteriology, 2006, v.188, pp. 977-987.
10363Phenotype Microarray Profiling of Staphylococcus aureus menD and hemB Mutants with the Small-Colony-Variant Phenotype, C. von Eiff, P. McNamara, K. Becker, D. Bates, X-H. Lei, M. Ziman, B.R. Bochner, G. Peters, and R.A. Proctor, Journal of Bacteriology, 2006, v.188, pp. 687-693.
10362 Discovering New Drugs on the Cellular Level, NASA Spinoff, 2005, pp. 12-13.
10361Global Physiological Analysis of Carbon- and Energy- Limited Growing Escherichia coli Confirms a High Degree of Catabolic Flexibility and Preparedness for Mixed Substrate Utilization, J. Ihssen, and T. Egli, Environmental Microbiology, 2005, v.7, pp. 1568-1581.
10360Role of HtrA in Surface Protein Expression and Biofilm Formation by Streptococcus mutants, S. Biswas and I. Biswas, Infection and Immunity, 2005, v.73, pp. 6923-6934.
10359 Requirements of the Dephospho-form of Enzyme IIANTR for Derepression of Escherichia coli K-12 ilvBN Expression, C-R. Lee, B-M. Koo, S-H. Cho, Y-J. Kim, M-J. Yoon, A. Peterkofsky, and Y-J. Seok, Molecular Microbiology, 2005, v.58, pp. 334-344.
10358 Harnessing Natural Diversity to Probe Metabolic Pathways, O.R. Homann, H. Cai, J.M. Becker, and S.L. Lindquist, PLOS Genetics, 2005, v. 1, pp. 0715-0729.
10357The Phagosomal Transporter A Couples Threonine Acquisition to Differentiation and Replication of Legionella pneumophila in Macrophages, J-D. Sauer, M.A. Bachman, and M.S. Swanson, Proceedings of the National Academy of Sciences, 2005, v.102, pp. 9924-9929.
10356A New Pathway for Pyrimidine Catabolism in E. coli K-12: The b1012-b1006 Operon, K.D. Loh, P. Gyaneshwar, E.M. Papadimitriou, R. Fong, K-S. Kim, Z. Zhou, W. Inwood, and S. Kutsu, Abstract from the International Union of Microbiological Societies, July 2005.
10355Metabolic Analysis of Helicobacter pylori Strain 26695 with Phenotype MicroArray Technology, X-H. Lei, S. Tan, D. E. Berg, and B. R. Bochner, Poster B-760, Session #5-B, presented at International Union of Microbiological Societies, July 2005.
10354Characterization of the Genetic Origins of Phenotypic Diversification of the Pathogenic Salmonellae, B. Bochner, C.A. Morales, S. Porwollik, J.G. Frye, R. Gast, X-H. Lei, M. Ziman, M. McClelland, and J. Guard-Bouldin, Poster B-800, Session # 6-B, presented at International Union of Microbiological Societies, July 2005.
10353Phenotype MicroArray Profiling of Staphylococcus aureus menD and hemB Mutants with Small Colony Variant (SCV) Phenotype, C. von Eiff, P. McNamara, K. Becker, D. Bates, X-H. Lei, M. Ziman, B.R. Bochner, G. Peters, and R.A. Proctor, Poster B-873, Session # 138-B, presented at International Union of Microbiological Societies, July 2005.
10352Use of Phenotype MicroArray Technology to Fingerprint E. coli Loss-of-Function Mutants, M. Ziman, D. Chan, J. Carlson, S. Suharnan, H. Mori, H. Gobara, K. Nakahigashi, T. Baba, S. Tamishima, H. Matsui, and M. Arita, Poster presented at the 7th Annual Frontier of Microbial Research Genome Workshop, March 2005.
10351Proline-Based Modulation of 2,4-Diacetylphloroglucinol and Viable Cell Yields in Cultures of Pseudomonas fluorescens Wild-Type and Over-Producing Strains, P.J. Slininger and M.A. Shea-Andersh, Applied Microbiology and Biotechnology, 2005, v.68, pp. 630-638.
10350Gene Array Analysis of Yersinia enterocolitica FlhD and FlhC: Regulation of Enzymes Affecting Synthesis and Degradation of Carbamoylphosphate, V. Kapatral, J.W. Campbell, S.A. Minnich, N.R. Thomson, P. Matsumura, and B.M. Pruess, Microbiology, 2004, v.150, pp. 2289-2300.
10349Phenotypic MicroArray Provides a Biochemical Profile of Staphylococcus aureus menD and hemB Mutants with Small Colony Variant (SCV) Phenotype, C. von Eiff, P. McNamara, D. Bates, K. Becker, B. Bochner, G. Peters, R.A. Proctor, Poster presented at 11th International Symposium on Staphylococci & Staphylococcal Infections, October 2004.
10348 Phenotype MicroArray Analysis of a S. aureus mnhD (NuoN-like) Mutant, a Thrombin-Induced Platelet Microbicidal Protein (tPMP)-Resistant Strain, R.A. Proctor, P.J. McNamara, A. Franco-Buff, B.R. Bochner, J. Schrenzel, M. Yeaman, and A. Bayer, Poster presented at 11th International Symposium on Staphylococci & Staphylococcal Infections, October 2004.
10347 Identifying Antimicrobials Using Isobologram Arrays, L.A. Wiater, K. Kim, J.D. Carlson, and P. Gadzinski, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.
10346Phenotype MicroArray Analysis of Two-Component Regulatory Genes of Escherichia coli, X-H. Lei, L. Zhou, B.L. Wanner, and B. R. Bochner, Poster K-144, presented at 103rd General Meeting of the American Society of Microbiology, May 2003.
10345 Genomic and Physiological Characterization of Desulfovibrio vulgaris Strains Isolated from A Metal Contaminated Lake,S.M. Stolyar, C.B. Walker, H-C. Yen, B. Zuniga, N. Pinel, H. Gough, Z. He, Q. He, J. Zhou, T.C. Hazen, S.E. Borglin, J.D. Wall, and D.A. Stahl, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10344 Phenotype MicroArray Analysis of Desulfovibrio vulgaris, S.E. Borglin, T.C. Hazen, J. Carlson, J. Wall, and D. Joyner, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10343 High Throughput Analysis of Stress Growth Response in Shewanella oneidensis MR1, . Katz, T.C. Hazen, R. Huang, D. Joyner, and S.E. Borglin, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10342 Linkage of 23S and rrlA Single Nucleotide Polymorphisms to Phenotype Heterogeneity of Salmonella Enteritidis, C.A. Morales and J. Guard-Bouldin, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10341 Legionella pneumophilaRequire phtA for Threonine Acquisition, Differentiation and Replication in Murine Bone Marrow Derived Macrophages, J-D. Sauer and M. Swanson, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10340 Phenotype MicroArray analysis of an Escherichia coli O157: H7 luxS Mutant, M. Walters, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10339 Correlation of Phenotype with the Genotype of egg-contaminating Salmonella Enteritidis, C.A. Morales, S. Porwllik, J.G. Frye, H. Kinde, M. McClelland, and J. Guard-Bouldin, Abstract from the ASM 105th Annual Meeting.
10338 Only Rarely Does Inorganic Polyphosphate (poly P) Depletion Decrease Motility in Helicobacter pylori, S. Tan, C.D. Fraley, W.L. Beatty, Q. Gong, B.K. Dieckgraefe, A. Kornberg, and D.E. Berg, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.
10337 Correlation of Phenotype with the Genotype of Egg-contaminating Salmonella Enteritidis, C.A. Morales, S. Porwllik, J.G. Frye, H. Kinde, M. McClelland, and J. Guard-Bouldin, Abstract from the ASM Conference on Integrating Metabolism and Genomics, April 30th-May 3rd 2004.
10336 Metabolic Differences in Yersinia pestis as a Function of Temperature and Calcium Detected by Phenotype Arrays, A.E. Holtz, I.K. Fodor, J.P. Fitch, and S.L. McCutchen-Maloney, Abstract from the 44th Annual Meeting of the American Society for Cell Biology, December 2004.
10335 A Plague on Many Houses, The American Society for Cell Biology Press Book 2004, p 6.
10334 LLNL’s Ann Holtz-Morris on Studying Y. pestis with Cellular Arrays, Inside BioAssays, Dec. 2004.
10333 Probing Microbial Phenotypes in Wake of Genomics Data Flood, J.F. Fox, ASM News, 2000, v.66, pp. 391-392.
10332 Characterization of the Escherichia coli AaeAB Efflux Pump: A Metabolic Relief Valve?, T.K. Van Dyk, L.J. Templeton, K.A. Cantera, P.L. Sharpe, and F.S. Sariaslani, Journal of Bacteriology, 2004, v. 186, pp. 7196-7204.
10331 Metabolomic Analysis of Escherichia coli K-12 Mutants with Deletions of 1440 Genes, M. Ito, T. Baba, H. Mori, and H. Mori, Abstract from the ASM Integrating Metabolism and Genomics Conference April 30 - May 3, 2004.
10330 A Novel Fermentation/Respiration Switch Protein Regulated by Enzyme IIAGlc in Escherichia coli, B.M. Koo, M.J. Yoon, C.R. Lee, T.W. Nam, Y.J. Choe, H. Jaffe, A. Peterkofsky, and Y.J Seok, The Journal of Biological Chemistry, 2004, v.279, pp. 31613-31621.
10329 Gene and Bacterial Identification Using High-Throughput Technologies: Genomics, Proteomics, and Phenomics, S.F. Al-Khaldi and M.M. Mossoba, Nutrition, 2004, v.20, pp. 32-38.
10328 Integrating High-Throughput and Computational Data Elucidates Bacterial Networks, M.W. Covert, E.M. Knight, J.L. Reed, M.J. Herrgard, and B.O. Palsson, Nature, 2004, v.429, pp. 92-96.
10327 Global Analysis of Predicted Proteomes: Functional Adaptation of Physical Properties, C.G. Knight, R. Kassen, H. Hebestreit, and P.B. Rainey, Proceedings of the National Academy of Sciences, 2004, v.101, pp. 8390-8395 .
10326 ASAP, a Systematic Annotation Package for Community Analysis of Genomes, J.D. Glasner, P. Liss, G. Plunkett III, A. Darling, T. Prasad, M. Rusch, A. Brynes, M. Gilson, B. Biehl, F.R. Blattner, and N.T. Perna, Nucleic Acids Research, 2003, v.31, pp. 147-151.
10325 Global Nutritional Profiling for Mutant and Chemical Mode-of-Action Analysis in Filamentous Fungi, M.M. Tanzer, H.N. Arst, A.R. Skalchunes, M. Coffin, B.A. Darveaux, R.W. Heiniger, and J.R. Shuster, Functional Integrated Genomics, 2003, v.3, pp. 160-170.
10324 Fast Tracking Bioprocessing Development and Optimisation, C. Gorman, Drug Plus International, 2003, v.2 pp. 6-9.
10323 Phenotype MicroArray Analysis of Escherichia coli
K-12 Mutants with Deletions of All Two-Component Systems
, L.Zhou, X.-H. Lei, B.R. Bochner, and B.L. Wanner, Journal of Bacteriology, 2003, v.185, pp. 4956-4972.
10322 Experimental Adaptive Radiation in Pseudomonas, R.C. MacLean and G. Bell, The American Naturalist, 2002, v.160 pp. 569-581.
10321 Divergent Evolution During an Experimental Adaptive Radiation, R.C. MacLean and G. Bell, Proc. Biol. Sci., 2003, v.270 pp. 1645-1650.
10320 New Technologies to Assess Genotype-Phenotype Relationships, B.R. Bochner, Nature Reviews Genetics, 2003, v.4 pp. 309-314.
10319 Phenotype MicroArrays: Their Use in Antibiotic Discovery, B.R. Bochner, Chapter 9 in Microbial Genomics and Drug Discovery, edited by T.J. Dougherty and S.J. Projan, Marcel Dekker, Inc., 2003.
10318 Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function, B.R. Bochner, P. Gadzinski, and E. Panomitros, Genome Research, 2001, v.11, pp. 1246-1255.
10317 Identification of Bacteria and Bacterial Genes: Infrared Spectroscopy, Genomics, Proteomics and Phenomics, S. Al-Khaldi and M. Mossoba, Microbiological Method Forum News, 2003, v.23, pp.1-6.
10316 FlhD/FlhC is a Regulator of Anaerobic Respiration and the Entner-Doudoroff Pathway through Induction of the Methyl-Accepting Chemotaxis Protein Aer, B.M. Prüß, J.W. Campbell, T.K. Van Dyk, C. Zhu, Y. Kogan, and P. Matsumura, Journal of Bacteriology, 2003, v.185, pp. 534-543.
10315 Next-Generation Microarray Technologies, B.J. Sedlack, Genetic Engineering News, 2003, v.23, p.20.
10314 Engineering a Reduced Escherichia coli Genome, V. Kolisnychenko, G. Plunkett, III, C.D. Herring, T. Feher, J. Posfai, F.R. Blattner, and G. Posfai, Genome Research, 2002, v.12, pp. 640-647.
10313 Carbon and Nitrogen Substrate Utilization by Archival Salmonella typhimurium LT2 Cells, B.S. Tracy, K.K. Edwards, and A. Eisenstark, BMC Evolutionary Biology, 2002, v.2, pp. 1-6.
10312 Regulation of Carbon Utilization by Sulfur Availability in Escherichia coli and Salmonella typhimurium, J.A. Quan, B.L. Schneider, I.T. Paulsen, M. Yamada, N.M. Kredich, and M.H. Saier, Jr., Microbiology, 2002, v.148, pp. 123-131.
10311 Gene Discovery and Gene Function Assignment in Filamentous Fungi, L. Hamer, K. Adachi, M.V. Montenegro-Chamorro, M.M. Tanzer, S.K. Mahanty, C. Lo, R.W. Tarpey, A.R. Skalchunes, R.W. Heiniger, S.A. Frank, B.A. Darveaux, D.J. Lampe, T.M. Slater, L. Ramamurthy, T.M. DeZwaan, G.H. Nelson, J.R. Shuster, J. Woessner, and J.E. Hamer, Proc. Natl. Acad. Sci. USA, 2001, v.9, pp. 5110-5115.
10310 Discovery Technologies – Intermediate Steps Follow Up On Genome Project, N. Flanagan, Genetic Engineering News, 2001, v.21, p.1.
10309 Proteome Chips Promise to Speed Decoding of the Human Genome, M. Downs, Small Times, 2001.
10308 Phenotyping Goes High Throughput with Biolog’s Phenotype MicroArrays, J. Lane, The Scientist, 2001, v.15.
10307 High-Throughput Cell Analytic Tool, B.R. Bochner, Drug Discovery/Technology News, 2001, v.4.
10306 Phenotype Arrays, A. Marshall, Nature Biotechnology, 2001, v.19, pp. 629.
10305 Cellular Assays to Drug Discovery, T. Mullane, Pharmaceutical Laboratory, June 2000.
10304 The Population Genetics of Ecological Specialization in Evolving Escherichia coli Populations, V. S. Cooper and R. E. Lenski, Nature, 2000, v.407, pp. 736-739.
10303 Megaplasmid pRme2011a of Sinorhizobium meliloti is Not Required for Viability, I. J. Oresnik, S. Liu, C. K. Yost, and M. F. Hynes, Journal of Bacteriology, 2000, v.182, pp. 3582-3586.
10302 The Consequences of Growth of a Mutator Strain of Escherichia coli as Measured by Loss of Function Among Multiple Gene Targets and Loss of Fitness, P. Funchain, A. Yeung, J. L. Stewart, R. Lin, M. M. Slupska, and J. H. Miller, Genetics Society of America, 2000, v.154, pp. 959-970.
10301 Diagnostic Advances: Genotypic, Phenotypic, Fast, J.F. Fox, ASM News, 2000, v.66, pp. 391-392.
 
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