Bibliography
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Medical Microbiology & EvaluationsBibliography of Publications on Biolog Applications
Updated September 28, 2004 Section 1
Medical Microbiology and Evaluations1047Molecular and Physiological Comparison of Azospirillum spp. Isolated from Rhizoctonia solani mycelia, Wheat Rhizosphere, and Human Skin Wounds, M.F. Cohen, X.Y. Han, and M. Mazzola, Canadian Journal of Microbiology, 2004, v.50, pp. 291-297.1046Rhizobium (Agrobacterium) radiobacter Identified as a Cause of Chronic Endophtalmitis Subsequent to Cataract Extraction, H. Namdari, S. Hamzavi, and R.R. Peairs, Journal of Clinical Microbiology, 2003, v.41, pp. 3998-4000.1045Identifying ‘Unusual’ Infectious Organisms in Immunocompromised Patients, I. Hart, Reprint from European Clinical Laboratory, 2002.1044Ralstonia taiwanensis sp. Nov., Isolated from Root Nodules of Mimsosa species and Sputum of a Cystic Fibrosis Patient, W. Chen, S. Laevens, T. Lee, T.Coenye, P. Des Vos, M. Mergeay, and P. Vandamme, International Journal of Systematic and Evolutionary Microbiology, 2001, v.51, pp. 1729-1735.1043Comparison of Vitek 32 and MicroLog ML3 Systems for Identification of Select Biological Warfare Agents, J.C. David, W.L. Thomas, R.J. Burgess, and T.L. Hadfield, Abstract from the ASM 101st General Meeting, May 2001. Plus Poster C-335 Presented at 101st General Meeting of the American Society of Microbiology, May 20011042Molecular Fingerprinting Using AFLP for Temporally Dispersed Brucella from Illinois, M.E. Dobson, J.C. David, R.S. Weyant, B. Zhang, and T.L. Hadfield, Abstract from the ASM 101st General Meeting, May 20011040Characterization of EF-4 Bacterial Strains by Metabolic and Genomic Fingerprinting, R. Singh, S. Qaiyumi, J. W. Allen, and H. N. Williams, Abstract from the ASM 100th General Meeting, May 21- 25, 20001037Novel Bacterium Isolated from a Lung Transplant Patient with Cystic Fibrosis, C. Pitulle, D.M. Cir, R. Barbers, andtron, B. Bochne M.D. Appleman, Journal of Clinical Microbiology, 1999, v.37, pp. 3851-3855.1036Coagulase-Negative Staphylococci Isolated from Acute Otitis Externa, D.W. Storman, C. McLean, M. McDonald, L. Clark, G. Cupp, and J. Runner, Poster presented at American Society for Microbiology, 19991035Comparison of Phenotypic and Genotypic Techniques for Identification of Unusual Pathogenic Aerobic Gram-Negative Bacilli, Y. W. Tang, N. M. Ellis, M. K. Hopkins, D. E. Dodge, and D. H. Persing, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, C-2141034Biochemical Investigations of Biogroups and Subspecies of Morganella morganii, J. M. Janda, S. L. Abbott, S. Khashe, and T. Robin, Journal of Clinical Microbiology, 1996, v.34, p. 108-1131033Microbiological Systems, Automated, ECRI, Healthcare Product Comparison Systems, 1995.1031Heterogeneity Within CDC Coryneform ANF-1 (-like) Bacteria: Description of Corynebacterium auris, sp. nov., G. Funke, P.A. Lawson, and M.D. Collins, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 484.1030Evaluation of the Biolog System for the Identification of Medically Important Yeast, M. Romagnoli, J. Osterhout, and W.G. Merz, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 107.1029Comparison of Automated and Semi-Automated Microbiological Identification Systems with Staphylococcus ATCC Reference Strains, M.E. Wilson, and N.E. Jackson, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 476.1028Characterization of Aerobic Microbiota Associated with the Tick Vector of Lyme Disease, P.A.W. Martin, A.S. Shropshire, and E.T. Schmidtmann, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 318.1027Evaluation of the Biolog System for the Identification of Bacillus anthracis, L.W.J. Baillie, M.N. Jones, P.C.B. Turnbull, and R.J. Manchee, Letters in Applied Microbiology, 1995, v.20, p. 209-211.1026Evaluation of Biolog System for Identification of Some Gram-Negative Bacteria of Clinical Importance, B. Holmes, M. Costa M. Ganner, S.L.W. On, and M. Stevens, Journal of Clinical Microbiology, 1994, v.32, p. 1970-1975.1025Comparison of GENETRAK and BIOLOG, INC. and Standard Methods for Identification of E. coli and Salmonella from Environmental Samples, M.A. Holder-Franklin, S. Brait, and N. Limoges, Abstracts of the Joint Annual Meeting of the Society for Industrial Microbiology and the Canadian Society of Microbiologists, 1993, p. 70.1024Comparison of the Identification of Citrobacter DNA Hybridization Genomospecies with Baxter MicroSCAN Walk/Away, Vitek, Biolog Microstation System, IDS Rapid one System, and API20E, S.B. Roman, C.M. O'Hara, and J.M. Miller, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 535.1023Biochemical and Enzymatic Characterization of Citrobacteria, D.F. Hanson, S.L. Abbott, and J.M. Janda, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 535.1020Evaluation of Biolog for Identification of Members of the Family Micrococcaceae, J.M. Miller, J.W. Biddle, V.K. Quenzer, and James C. McLaughlin, Journal of Clinical Microbiology, 1993, v.31, p. 3170-3173.1019Advances in the Identification of Bacteria and Yeast, B.R. Bochner, American Clinical Laboratory, 1993, p. 6.1018Microbiology Systems: Guidance Article, ECRI, Health Devices, 1993, v.22, p. 123-153.1017Isolation and Identification of a Catalase-Negative Strain of Staphylococcus aureus, V.C. Wheeler, J.K. Overly, and T.L. Overman, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 502.1016Automated Systems for Identification of Microorganisms, C.E. Stager and J.R. Davis, Clinical Microbiology Reviews, 1992, v.5, p. 302-327.1015Comparison of Rapid NF, Biolog, and Cellular Fatty Acid Analysis for the Rapid Identification of Nonfermenting Gram-Negative Rods, B.C. Schieven, E. Henry, L. Stoakes, and Z. Hussain, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p. 421.1014Comparison of the Biolog and MIDI Systems for Identification of Gram-Negative Nonfermenters, J. Gutschenritter, P. Schams, C. O'Hara, and D. Persing, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p. 421.1013Identification of Human Pathogenic Coagulase-Negative Staphylococcus Species by Biolog and Staph-Ident, J.C. McLaughlin, V.H. Quenzer, T.L. Merlin, W.C. Thompson, and J. Fierro, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p. 424.1012Comparison of the Identification of Gram-Positive Aerobic Bacteria by Biolog and Vitek, J.C. McLaughlin, K.L. Ruoff, V.H. Quenzer, T.L. Merlin, W.C. Thompson, and J. Fierro, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p. 424.1011Biolog Technology - Applications from a Clinical Perspective, V. Wilson, Abstracts of the Australian Society for Microbiology, 1992, #W14.1.1010Comparison of Biolog to the Conventional Identification of Gram Negative Rods in a Public Health Laboratory, Poster Presentation at the California Association of Public Health Laboratory Directors, 1992.1009Evaluation of the Biolog Automated Microbial Identification System, J.M. Klingler, R.P. Stowe, D.C. Obenhuber, T.O. Groves, S.K. Mishra, D.L. Pierson, Applied and Environmental Microbiology, 1992, v.58, p. 2089-2092.1008Preliminary Evaluation of Biolog, A Carbon Source Utilization Methods for Bacterial Identification, J.M. Miller and D.L. Rhoden, Journal of Clinical Microbiology, 1991, v.29, p. 1143-1147.1007Identification of Over 500 Gram-negative Species by a Single Test Panel, B.R. Bochner, American Clinical Laboratory, 1991, p. 14.1006A Comparison of Biolog, Microscan, and Vitek AMS for the Identification of Infrequently Isolated Human Gram-negative Bacterial Pathogens, J.C. McLaughlin, W.G. Barron, T.L. Merlin, J. Fierro, and W.C. Thompson, Abstracts of the 91st Meeting of the American Society for Microbiology, 1991, p. 377.1005Rapid Identification of Gram Negative Bacteria by Carbon Source Oxidation, S.S. Barth, K.B. Williams, S.J. Gibson, and L.B. Elliott, Abstracts of the 91st Meeting of the American Society for Microbiology, 1991, p. 377.1004Comparison of Four Identification Methods Used to Identify Pseudomonas Cepacia Isolated from Sputum of Cystic Fibrosis Patients, S.B. Roman, L.A. Carson, C.M. O'Hara, D.A. Pegues, and M. Miller, Abstracts of the 91st Meeting of the American Society for Microbiology, 1991, p. 379.1003Development of the Biolog Substrate Utilization System for Identification of Legionella spp., W.S. Mauchline and C.W. Keevil, Applied and Environmental Microbiology, 1991, v.57, p. 3345-3349.1002Biochemical Fingerprints of Legionella spp. by the Biolog System: Presumptive Identification of Clinical and Environmental Isolates, R. Armon, I. Potasman, and M. Green, Letters in Applied Microbiology, 1990, v.11, p. 290-292.1001Species Identification of Aeromonas Strains Based on Carbon Substrate Oxidation Profiles, A.M. Carnahan, S.W. Joseph, and J.M. Janda, Journal of Clinical Microbiology, 1989, v.27, p. 2128-2129. - Veterinary MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 2
Veterinary Microbiology2017First Isolation of Histophilus somni from Goats, K. Janosi, I. Hajtos, L. Makrai, M. Gyuranecz, J. Varga, L. Fodor. Vet. Microbiol., 2009, v. 133, pp. 383-386.2016Respiratory Infection of Turkeys with Listeria monocytogenes Scott A, G.R. Huff, W.E. Huff, J.N. Beasley, N.C. Rath, M.G. Johnson, and R. Nannapaneni, Avian Diseases, 2005, v.49, pp. 551-557.2015Vibrio splendidus Biotype 1 as a Cause of Mortalities in Hatchery-Reared Larval Turbot, Scophthalmus maximum (L.), R. Thomson, H.L. Macpherson, A. Riaza, and T.H. Birbeck, Journal of Applied Microbiology, 2005, v.99, pp. 243-250.2014Biochemical Characterization of Different Genotypes of Paenibacillus larvae subsp. larvae, a Honey Bee Bacterial Pathogen, S. Neuendorf, K. Hedtke, G. Tangen, and E. Genersch, Microbiology, 2004, v.150, pp. 2381-2390.2013A Comparative Study of Edwardsiella ictaluri Parent (EILO) and E. ictaluri Rifampicin-Mutant (RE-33) Isolates Using Lipopolysaccharides, Outer Membrane Proteins, Fatty Acids, Biolog, API 20E and Genomic Analyses, C.R. Arias, C.A. Shoemaker, J.J. Evans and P.H. Klesius, Journal of Fish Diseases, 2003, v.26, pp. 415-421.2012Phenotypic and Genotypic Characterization of Competitive Exclusion Products for Use in Poultry, R.D. Wagner, D.D. Paine, and C.E. Cerniglia, Journal of Applied Microbiology, 2003, v.94, pp. 1098-1107.2011Molecular Fingerprinting Using AFLP for Temporally Dispersed Brucella from Illinois, M.E. Dobson, J.C. David, R.S. Weyant, B. Zhang, and T.L. Hadfield, Abstract from the ASM 101st General Meeting, May 20012010Characterization of EF-4 Bacterial Strains by Metabolic and Genomic Fingerprinting, R. Singh, S. Qaiyumi, J. W. Allen, and H. N. Williams, Abstract from the ASM 100th General Meeting, May 21- 25, 20002009Identification and Management of an Outbreak of Flavobacterium meningosepticum Infection in a Colony of South African Clawed Frogs (Xenopus laevis), S. L. Green, D. M. Bouley, R. J. Tolwani, K. S. Waggie, B. D. Lifland, G. M. Otto, and J. E. Ferrell, JAVMA, 1999, v.214, pp. 1833-1838.2007Microbiological Analysis of Striped Bass (Morone saxatilis) Grown in a Recirculating System, Patti C. Nedoluha, Dennis Westhoff, Journal of Food Protection, 1997, v.60, pp. 948-953.2006Identification of Francisella tularensis using Biolog GN MicroPlate with Visual Reading, B. D. Lifland, Abstracts of 14th Annual Meeting of the Northern California American Society of Microbiology, November, 1997.2005Phenotypic and Ribosomal RNA Characterization of Arcobacter Species Associated with Porcine Abortions, L. Schroeder-Tucker, I.V. Wesley, J. Kiehlbauch, L.A. Thomas, and D.J. Larson, Abstracts of the 76th Meeting of the Conference of Research Workers in Animal Diseases, Illinois, 1995.2004Evaluation of the Biolog System for the Identification of Bacillus anthracis, L.W.J. Baillie, M.N. Jones, P.C.B. Turnbull, and R.J. Manchee, Letters in Applied Microbiology, 1995, v.20, p.209-211.2003Characterization of Escherichia coli Isolated from the Tonsils of Cattle, G.H. Frank, R.E. Briggs, and R.A. Schneider, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 83.2002Preliminary Studies on the Use of Carbon Substrate Utilization Patterns for Identification of Brucella Species, J.D. Wong, J.M. Janda, and P.S. Duffey, Diagnostic Microbiology and Infectious Disease, 1992, v.15, p. 109-113.2001Differentiation of Brucella Biovars Using the Biolog System, D.R. Ewalt, J.B. Payeur, and B.R. Bochner, 33rd Annual Meeting of the American Association of Veterinary Laboratory Diagnosticians, 1990, p. 73. - Plant MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 3
Plant Microbiology3047Reliability of Diagnostic Techniques for Erwinia amylovora, the Causative Agent of Fire Blight Disease, B. Kokoskova, and I. Mraz, Folia Microbiology, 2005, v.50, pp. 217-221.3046New Host Plants of Erwinia amylovora in Bulgaria, I. Atanasova, P. Kabadjova, N. Bogatzevska, P. Moncheva, Z. Naturforsch, 2005, v.60, pp. 893-898.3045Effects of Community Versus Single Strain Inoculants on the Biocontrol of Salmonella and Microbial Community Dynamics in Alfalfa Sprouts, A. Matos and J. L. Garland, Journal of Food Protection, 2005, v.68, pp. 40-48.3044Molecular Characterisation of Xanthomonas Strains Isolated from Aroids in Mauritius, M.H.R. Khoodoo, F. Sahin, M.F. Donmez, and Y. Jaufeerally Fakim, Systematic and Applied Microbiology, 2005, v.28, pp. 366-380.3043Enumeration and Identification of Microbial Flora from the Gut of the Horned Passalus or Betsy-Beetle, Odontotaenius disjunctus (llliger), J.B. Jackson, D. Talreja, A. Mikell, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.3042Vibrio spp within Coral Mucous Provide Protective Activity Against Potential Coral Disease Pathogens, J.T. Lisle, K.V. Gordon, V.J. Harwood, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.3041Polyphasic Characterization of Xanthomonads Isolated from Onion, Garlic and Welsh Onion (Allium spp.) and their Relatedness to Different Xanthomonas Species, P. Roumagnac, L. Gagnevin, L. Gardan, L. Sutra, C. Manceau, E.R. Dickstein, J.B. Jones, P. Rott, and O. Pruvost, International Journal of Systematic and Evolutionary Microbiology, 2004, v.54, pp. 15-24.3040Synopsis on the Taxonomy of the Genus Xanthomonas, L. Vauterin, J. Rademaker, and J. Swings, The American Phytopathological Society, 2000, v.90, pp. 677-682.3039Characterisation of Lysobacter enzymogenes (Christensen and Cook 1978) Strain 3.1T8, a Powerful Antagonist of Fungal Diseases of Cucumber, L.B. Folman, J. Postma and J.A. van Veen, Microbiological Research, 2003, v.158, pp. 107-115.3038Effects of Gypsophila Saponins on Bacterial Growth Kinetics and on Selection of Subterranean Clover Rhizosphere Bacteria, F. Fons, N. Amellal, C. Leyval, N. Saint-Martin and M. Henry, Canadian Journal of Microbiology, 2003, v.49, pp. 367-373.3037Diversity of Gram Negative Bacteria Antagonistic Against Major Pathogens of Rice from Rice Seed in the Tropic Environment, G.L. Xie, A. Soad, J. Swings and T.W. Mew, Reprint from J. Zhejiang University Science, 2003.3036Bacterial Diversity Associated with Subalpine Fir (Abies lasiocarpa) Ectomycorrhizae Following Wildfire and Salvage-Logging in Central British Columbia, D.J. Norman and J.M.F. Yuen, Canadian Journal of Plant Pathology, 1998, v.20, pp. 171-175.3035Bacterial Diversity Associated with Subalpine Fir (Abies lasiocarpa) Ectomycorrhizae Following Wildfire and Salvage-Logging in Central British Columbia, M.B. Khetmalas, K.N. Egger, H.B. Massicotte, L.E. Tackaberry, and M.J. Clapperton, Canadian Journal of Microbiology, 2002, v.48, pp. 611-625.3034Diversity of Culturable Bacterial Populations Associated to Tuber borchii Ectomycorrhizas and their Activity on T. borchii Mycelial Growth, C. Sbrana, M. Agnolucci, S. Bedini, A. Lepera, A. Toffanin, M. Giovanneti, and M. P. Nuti, FEMS Microbiology Letters, 2002, v.211, pp. 195-201.3032Phenotypic Characterization of Xenorhabdus bovienii Bacterial Strains Isolated from Steinernema feltiae Nematodes Native to Europe and Canada, H. He, J. Gow, and R. Gordon, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19983031Identification of Phytopathogenic Coryneform Bacteria Using the Biolog Automated Microbial Identification System, A. Harris-Baldwin and N.C. Gudmestad, Plant Disease, 1996, v.80, pp. 874-878.3030Bacterial Diseases of Rice. II. Characterization of Pathogenic Bacteria Associated with Sheath Rot Complex and Grain Discoloration of Rice in the Philippines, B. Cotton, M.F. VanOutryve, M.T. Cerez, M. DeCleene, J. Swings, and T.W. Mew, Plant Disease, 1996,v. 80:4, p. 438-445.3029Characterization of Bacillus thuringiensis Strains Using the Biolog Identification System and Supplemental Biochemical Tests, P.A.W. Martin and A.S. Shropshire, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p. 390.3028Virulence on Citrus of Pseudomonas syringae Strains that Control Postharvest Green Mold of Citrus Fruit, J.L. Smilanick, C.C. Gouin-Behe, D.A. Margosan, C.T. Bull, B.E. Mackey, Plant Disease, 1996, v. 80:10, p. 1123-1128.3027Reclassification of Xanthomonas, L. Vauterin, B. Hoste, K. Kersters, and J. Swings, International Journal of Systematic Bacteriology, 1995, v. 45, p. 472-489.3026Genotypic and Phenotypic Heterogeneity of Fluorescent Pseudomonads Inhabiting Wheat Rhizosphere, L. Li, and D.H. Demezas, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 336.3025New Classification of the Genus Xanthomonas, L. Vauterin, B. Hoste, K. Kersters, and J. Swings, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 482.3024Bacterial Leaf Spot of Statice Caused by Pseudomonas andropogonis, D. Anderson, and N. Tisserat, Journal of Applied Plant Pathology, 1994, v. 78, p. 1218.3023First Report of Bacterial Gall of Wisteria sinensis Caused by Erwinia herbicola pv. milletiae in California, D.C. Opgenorth, Journal of Applied Plant Pathology, 1994, v. 78, p. 1217.3022Appropriate Bacterial Identification Systems for Small Plant Pathology Laboratories Overseas Incorporating the Biolog Method, R. Black, and A. Sweetmore, Plant Pathology, 1994, v. 43, p. 438-441.3021Fungi and Gram-Negative Bacteria as Soilborne Minor Pathogens of Goat's Rue (Galega orientalis lam.), J.P.T. Valkonen, W. von Heiroth, and M.L. Savela, Annals of Applied Biology, 1993, v. 123, p. 257-269.3020Usefulness of Nutritional Screening for the Identification of Xanthomonas campestris DNA Homology Groups and Pathovars, D.C. Hildebrand, M. Hendson, and M.N. Schroth, Journal of Applied Bacteriology, 1993, v. 75, p. 447-455.3019The Significance of the Ecological Niche Concept in Biological Control of Epiphytic Bacterial Pests and Pathogens, M. Wilson and S.E. Lindow, Fallen Leaf Lake Conference on Microbial Ecology and Biological Control, South Lake Tahoe, 1994, p. 15-18.3018Ecological Similarity and Coexistence of Epiphytic Ice-Nucleating (Ice+) Pseudomonas syringae Strains and a Non-Ice-Nucleating (Ice-) Biological Control Agent, M. Wilson and S. Lindow, Applied and Environmental Microbiology, 1994, v. 60, p. 3128-3137.3017Physiological, Chemical, Serological, and Pathogenic Analyses of a Worldwide Collection of Xanthomonas campestris pv. vesicatoria Strains, H. Bouzar, J.B. Jones, R.E. Stall, N.C. Hodge, G.V. Minsavage, A.A. Benedict, and A.M. Alvarez, Phytopathology, 1994, v. 84, p. 663-671.3016Two Pathogens Causing Bacterial Spot of Tomato, H. Bouzar, J.B. Jones, R.E. Stall, N.C. Hodge, G.V. Minsavage, A. Alvarez, and C. Beaulieu, Abstracts of the Sixth International Congress of Plant Pathology, 1993, p. 36.3015Diversity of Agrobacterium Isolates from Rubus Species with Crown Gall, M. Canfield, S. Lu, H. Bouzar, C. Hodge, J. Jones, and L.W. Moore, Abstracts of the Sixth International Congress of Plant Pathology, 1993, p. 35.3014A New Tomato Race of Xanthomonas campestris pv vesicatoria in Florida, J.B. Jones, R.E. Stall, H. Bouzar, G.V. Minsavage, J.F. Wang, G.C. Somodi, N.C. Hodge, and J.W. Scott, Abstracts of the Sixth International Congress of Plant Pathology, 1993, p.31.3013Similarity between Copper Resistance Genes from Xanthomonas campestris and Pseudomonas syringae, A.E. Voloudakis, C.L. Bender and D.A. Cooksey, Applied and Environmental Microbiology, 1993, v. 59, p. 1627-1634.3012Evaluation of the Biolog GN MicroPlate System for Identification of Some Plant-Pathogenic Bacteria, J.B. Jones, A.R. Chase and G.K. Harris, Plant Disease, 1993, v. 77, p. 553-558.3011Bacterial Blight of Crambe abyssinica in Missouri Caused by Xanthomonas campestris, J.D. Mihail, S.J. Taylor and P.E. Verslues, Plant Disease, 1993, v. 77, p. 569-574.3010Evaluation of the Biolog Substrate Utilization System to Identify and Assess Metabolic Variation Among Strains of Xanthomonas campestris pv citri, C. Verniere, O. Pruvost, E.L. Civerolo, O. Gambin, J.P. Jacquemoud-Collet and J. Luisetti, Applied and Environmental Microbiology, 1993, v. 59, p. 243-249.3009Characterization of Xanthomonas campestris Strains from Aroids Using Physiological, Pathological, and Fatty Acid Analyses, A.R. Chase, R.E. Stall, N.C. Hodge, and J.B. Jones, Phytopathology, 1992, v. 82, p. 754-759.3008Characterization of Xanthomonas campestris Strains from Araliaceae, A.R. Chase, N.C. Hodge, R.E. Stall, and J.B. Jones, Oral Presentation #A39, Annual Meeting of the American Phytopathological Society, August, 1992.3007Xanthomonad Diversity on Geranium Leaves as Determined by Monoclonal Antibodies (MABS), Carbon Source Utilization Patterns, Fatty Acid Analyses (FAME), and Pathogenicity, J.B. Jones, A.R. Chase, N.C. Hodge, and R.E. Stall, Oral Presentation #A38, Annual Meeting of the American Phytopathological Society, August, 1992.3006Differences in Substrate Utilization Among Isolates of Xanthomonas oryzae pv. oryzae and X. campestris pv. oryzicola from Several Countries, D.E. Griffin, W.M. Dowler, J.S. Hartung, and M.R. Bonde, Poster Session #673, Annual Meeting of the American Phytopathological Society, August, 1991.3005Evaluation of the Biolog System for Identification of Plant Pathogenic Bacteria, J.B. Jones, A.R. Chase, and G.K. Harris, Poster Session #589, Annual Meeting of the American Phytopathological Society, August, 1991.3004Population Diversity and Distribution of Xanthomonas campestris pv. dieffenbachiae, A. Alvarez, R. Lipp, D. Norman, and A. Benedict, Poster Session #286, Annual Meeting of the American Phytopathological Society, August, 1991.3003Variation Among Strains of Xanthomonas campestris Causing Citrus Bacterial Spot, J.S. Hartung and E.L. Civerolo, Plant Disease, 1991, v. 75, p. 622-626.3002A Leaf Spot and Blight of Abelmoschus moschatus Caused by a Pathovar of Pseudomonas syringae, C.S. Brown, and S.M. McCarter, Plant Disease, 1991, v. 75, p. 424-429.3001Leaf Spot of Cilantro in California Caused by a Nonfluorescent Pseudomonas syringae, D.A. Cooksey, H.R. Azad, and A.O. Paulus, Plant Disease, 1991, v. 75, p. 101. - Microbial CommunitiesBibliography of Publications on Biolog Applications
Updated April 2006 Section 4
Microbial Communities4237Temporal Association of Entomopathogenic Nematodes (Rhabditida: Steinernematidae and Heterorhabditidae) and Bacteria, D.H. Gouge and J.L. Snyder, Journal of Invertebrate Pathology, 2006, v.91, pp. 147-157.4236Microbial Communities in Wetlands of the Athabasca Oil Sands: Genetic and Metabolic Characterization, A.M. Hadwin, L.F Del Rio, L.J. Pinto, M. Painter, R. Routledge, and M.M. Moore, FEMS Microbiology Ecology, 2006, v.55, pp. 68-78.4235Effects of Artificial Defoliation of Pines on the Structure and Physiology of the Soil Fungal Community of a Mixed Pine-Spruce Forest, K. Cullings, C. Raleigh, M.H New, and J. Henson, Applied and Environmental Microbiology, 2005, v.71, pp. 1996-2000.4234Metabolic Responses of Microbiota to Diesel Fuel Addition in Vegetated Soil, M.R.T. Palmroth, U. Münster, J. Pichtel, and J.A. Puhakka, Biodegradation, 2005, v.16, pp. 91-101.4233Effects of Lead and Cadmium Nitrate on Biomass and Substrate Utilization Pattern of Soil Microbial Communities, M. Akmal, X. Jianming, L. Zhaojun, W. Haizhen, and Y. Huaiying, Chemosphere, 2005, v.60, pp. 508-514.4232Structural and Functional Diversity of Microbial Communities from a Lake Sediment Contaminated with Trenbolone, an Endocrine-Disrupting Chemical, V. Radl, K. Pritsch, J.C. Munch, and M. Schloter, Environmental Pollution, 2005, v.137, pp. 345-353.4231Assessment of Self-Organizing Maps to Analyze Sole-Carbon Source Utilization Profiles, J. Leflaive, R. Céréghino, M. Danger, G. Lacroix, and L. Ten-Hage, Journal of Microbiological Methods, 2005, v.62, pp. 89-102.4230Soil Microbial Community Response to Land Use Change in an Agricultural Landscape of Western Kenya, D.A. Bossio, M.S. Girvan, L. Verchot, J. Bullimore, T. Borelli, Al Albrecht, K.M. Scow, A.S. Ball, J.N. Pretty, and A.M. Osborn, Microbial Ecology, 2005, v.49, pp. 50-62.4229Microbial Structural Diversity Estimated by Dilution-Extinction of Phenotypic Traits and T-RFLP Analysis Along a Land-Use Intensification Gradient, E. del V. Gomez, J.L. Garland, and M.S. Roberts, FEMS Microbiology Ecology, 2004, v.49, pp. 253-259.4228Pollution-Induced Community Tolerance of Soil Microbes in Response to a Zinc Gradient, M.R.H. Davis, F-J. Zhao, and S.P. McGrath, Environmental Toxicology and Chemistry, 2004, v.23, pp. 2665-2672.4227Changes of Soil Microbiological Properties Caused by Land Use Changing from Rice-Wheat Rotation to Vegetable Cultivation, X.G. Lin, R. Yin, H.Y. Zhang, J.F. Huang, R.R. Chen, and Z.H. Cao, Environmental Geochemistry and Health, 2004, v.26, pp. 119-128.4226Use of Biolog for the Community Level Physiological Profiling (CLPP) of Environmental Samples, H. Insam and M. Goberna, Molecular Microbial Ecology Manual, Second Edition 5.3.2, 2004, pp. 1-8.4225Molecular Diversity of Tannic Acid Degrading Bacteria Isolated from Tannery Soil, S.P. Chowdhury, S. Khanna, S.C. Verma, and A.K. Tripathi, Journal of Applied Microbiology, 2004, v.97, pp. 1210-1219.4224Heterotrophic Community-Level Physiological Profiles of Domestic Wastewater Following Treatment by Small Constructed Subsurface Flow Wetlands, K.R. Hench, A.J. Sexstone, and G.K. Bissonnette, Water Environment Research, 2004, v.76, pp. 468-473.4223Effects of Antibiotics on Soil Bacterial Communities - Comparing Molecular Techniques and Community Analyses, H. Schmidt, P. van Beelen, and E. Smit, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.4222One-to-One Comparison: A New Approach to Analyzing Metabolic Diversity Data, C. San Miguel, M. Dulinski, R.L. Tate, III, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.4221Comparison of Microbial and Meiofaunal Community Analyses for Determining Impact of Heavy Metal Contamination, R.J. Ellis, B. Neish, M.W. Trett, J.G. Best, A.J. Weightman, P. Morgan, and J.C. Fry, Journal of Microbiological Methods, 2001, v.45, pp. 171-185.4220Structure of Microbial Communities in Activated Sludge: Potential Implications for Assessing the Biodegradability of Chemicals, L.J. Forney, W-T. Liu, J.B. Guckert, Y. Kumagai, E. Namkung, T. Nishihara, and R.J. Larson, Ecotoxicology and Environmental Safety, 2001, v.49, pp. 40-53.4219Physiological and Chemotaxonomical Studies on Microflora within a Composter Operated at High Temperature, M.S. Pedro, N.R. Hayashi, T. Mukai, M. Ishii, A. Yokota, and Y. Igarashi, Journal of Bioscience and Bioengineering, 1999, v.88, pp. 92-97.4218Resource Competition and Adaptive Radiation in a Microbial Microcosm, R.C. Maclean, A. Dickson, and G. Bell, Ecology Letters, 2005, v.8, pp. 38-46.4217Microbial Community Composition of Long-Term TNT-Contaminated Soil, E.R. Travis, N.C. Bruce, and S.J. Rosser, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.4216Structure and Activity of the Microbial Community in a Confined Disposal Facility at ToledoHarbor, I.I. Kassem, V. Sigler, and D. Dwyer, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.4215Manual and Automated Instrumentation for Identification of Enterobacteriaceae and Other Aerobic Gram-Negative Bacilli, C.M. O’Hara, Clinical Microbiology Reviews, 2005, v.18, pp. 147-162.4214Carbon Source Utilization by Enterococci as a Method to Distinguish Sources of Fecal Contamination for Texas Beach Waters, J.M. Mott, Abstract from National Beaches Conference, October 2004.4213The Evolution of a Pleiotropic Fitness in Pseudomonas Fluorescens, R.C. MacLean, G. Bell, and P.B. Rainey, Proceedings of the National Academy of Sciences, 2004, v.101, pp. 8072-8077.4212Stability of Bacterial Populations in Tropical Soil Upon Exposure to Lindane, R.A. Rodriguez and G.A. Toranzos, International Microbiology, 2003, v.6, pp. 253-258.4211Analysis of Structural and Physiological Profiles to Assess the Effects of Cu on Biofilm Microbial Communities, B. Massieux, M.E.Y. Boivin, F.P. van den Ende, J. Langenskiold, P. Marvan, C. Barranguet, W. Admiraal, H.J. Laanbroek, and G. Zwart, Applied and Environmental Microbiology, 2004, v.70, pp. 4512-4521.4210Long-Term Experimental Evolution in Escherichia coli. X. Quantifying the Fundamental and Realized Niche, V.S. Cooper, BMC Evolutionary Biology, 2002, v.2, pp. 1-9.4209Application of Physiological Profiles to Assessment of Community Properties, A.L. Mills and J.L. Garland, ASM Manual of Environmental Microbiology, 2001, pp. 135-146.4208Relative Effectiveness of Kinetic Analysis vs. Single Point Readings for Classifying Environmental Samples Based on Community-Level Physiological Profiles (CLPP), J.L. Garland, A.L. Mills, and J.S. Young, Soil Biology & Biochemistry, 2001, v.33, pp. 1059-1066.4207Response of Soybean Rhizosphere Communities to Human Hygiene Water Addition as Determined by Community Level Physiological Profiling (CLPP) and Terminal Restriction Fragment Length Polymorphism (TRFLP) Analysis, L. Kerkhof, M. Santoro, and J. Garland, FEMS Microbiology Letters, 2000, v.184, pp. 95-101.4206The Soil FungiLog Procedure: Method and Analytical Approaches toward Understanding Fungal Functional Diversity, E.A. Sobek and J.C. Zak, Mycologia, 2003, v.95, pp. 590-602.4204Community-Level Physiological Profiles of Bacteria and Fungi: Plate Type and Incubation Temperature Influences on Contrasting Soils, A.T. Classen, S.I. Boyle, K.E. Haskins, S.T. Overby, and S.C. Hart, Federation of European Microbiological Societies, 2003, v.44, pp. 319-328.4203Composition and Physiological Profiling of Sprout-Associated Microbial Communities, A. Matos, J.L. Garland, and W.F. Fett, Journal of Food Protection, 2002, v.65, pp. 1903-1908.4202Soil Type is the Primary Determinant of the Composition of the Total and Active Bacterial Communities in Arable Soils, M.S. Girvan, J. Bullimore, J.N. Pretty, A.M. Osborn, and A.S. Ball, Applied and Environmental Microbiology, 2003, v.69, pp. 1800-1809.4201Arctic Microorganisms Respond More to Elevated UV-B Radiation than C02, D. Johnson, C.D. Campbell, J.A. Lee, T.V. Callaghan, and D. Gwynn-Jones, Nature, 2002, v.416, pp. 82-84.4200Soil Metabolic Fingerprinting, J. Hogan, D. Ryan, and D. Dowling, Poster presented at the 102nd General Meeting of the American Society for Microbiology, May 2002.4199Analysis of Microbial Community Function Diversity Using Sole-Carbon-Source Utilisation Profiles – a Critique, J. Preston-Mafham, L. Boddy, and P.F. Randerson, FEMS Microbiology Ecology, 2002, v.42, pp. 1-14.4198Microbial Communities in Different Soil Types Do Not Converge After Diesel Contamination, J.G. Bundy, G.I. Paton, and C.D. Campbell, Journal of Applied Microbiology, 2002, v.92, pp. 276-288.4197Methodological Variability in Microbial Community Level Physiological Profiles, T.C. Balser, J.W. Kirchner, and M.K. Firestone, Soil Sci. Soc. Am. J., 2002, v.66, pp. 519-522.4196In Situ Fixation of Metals in Soils Using Bauxite Residue: Biological Effects, E. Lombi, F.J. Zhao, G. Wieshammer, G. Zhang, and S.P. McGrath, Environmental Pollution, 2002, v.118, pp. 445-452.4195Application of Carbon Source Utilization Patterns to Measure the Metabolic Similarity of Complex Dental Plaque Biofilm Microcosms, S.A. Anderson, C.H. Sissons, M.J. Coleman, and L. Wong, Applied and Environmental Microbiology, 2002, v.68, pp. 5779-5783.4194Bacterial Distribution and Phylogenetic Diversity in the Changjiang Estuary Before the Construction of the Three Gorges, H. Sekiguchi, H. Koshikawa, M. Hiroki, S. Murakami, K. Xu, M. Watanabe, T. Nakahara, M. Zhu, and H. Uchiyama, Microbial Ecology, 2002, v.43, pp. 82-91.4193Soil and Plant Effects on Microbial Community Structure, J.S. Buyer, D.P. Roberts, and E. Russek-Cohen, Canadian Journal of Microbiology, 2002, v.48, pp. 955-964.4192Impact of Fumigants on Soil Microbial Communities, A.M. Ibekwe, S.K. Papiernik, J. Gan, S.R. Yates, C.H. Yang, and D.E. Crowley, Applied and Environmental Microbiology, 2001, v.67, pp. 3245-3257.4191Changes in Soil Microbial Community Due to Long-Term Application of Zea mays Root Exudates Extracted from Hydroponic Apparatus, K.J. Yoshitomi and J.R. Shann, Soil Biology and Biochemistry, 2001, v.33, pp. 1769-1776.4190Adaptation of the Bacterial Community to Mercury Contamination, A.K. Muller, L.D. Rasmussen, and S.J. Sorensen, FEMS Microbiology Letters, 2001, v.24, pp. 49-53.4189A Comparison of Sole Carbon Source Utilization Patterns and Phospholipid Fatty Acid Profiles to Detect Changes in the Root Microflora of Hydroponically Grown Crops, S. Khalil, E. Baath, B. Alsanius, J.E. Englund, P. Sundin, U.E. Gertsson, and P. Jensen, Canadian Journal of Microbiology, 2001, v.47, pp. 302-308.4187Structural and Functional Analysis of Whole-Soil Microbial Communities for Risk and Efficacy Testing Following Microbial Inoculation of Wheat Roots in Diverse Soils, J.V. Gagliardi, J.S. Buyer, J.S. Angle, and E. Russek-Cohen, Soil Biology & Biochemistry, 2001, v.33, pp. 25-40.4186Analysis of Fungal Communities by Sole Carbon Source Utilization Profiles, J.S. Buyer, D.P. Roberts, P. Millner, and E. Russek-Cohen, Journal of Microbiological Methods, 2001, v.45, pp. 53-60.4185Impact of Dilution on Microbial Community Structure and Functional Potential: Comparison of Numerical Simulations and Batch Culture Experiments, R. B. Franklin, J. L. Garland, C. H. Bolster, and A. L. Mills, Applied and Environmental Microbiology, 2001, v.67, pp. 702-712.4184Analysis of Microbial Communities in a Landfill Leachate Polluted Aquifer using a New Method for Anaerobic Physiological Profiling and 16s rDNA Based Fingerprinting, W. F. M. Röling, B. M. van Breukelen, M. Braster, M. T. Goeltom, J. Groen, and H. W. van Verseveld, Microbial Ecology, 2000, v.40, pp. 177-188.4183Variation of Microbial Rhizosphere Communities in Response to Crop Species, Soil Origin, and Inoculation with Sinorhizobium meliloti L33, R. Miethling, G. Wieland, H. Backhaus, and C. C. Tebbe, Microbial Ecology, 2000, v.41, pp. 43-56.4182Microbial Biomass and Community Structure in a Sequence of Soils with Increasing Fertility and Changing Land Use, H. Yao. Z. He, M. J. Wilson, and C. D. Campbell, Microbial Ecology, 2000, v.40, pp. 223-237.4181Cadmium Contamination on the Soil Microbial Community Diversity by Biolog and Denaturing Gradient Gel Electrophoresis (DGGE) Analysis, A. Wang, J. Chen, and D. Crowley, Abstract from the ASM 100th General Meeting, May 21- 25, 20004180Adapting Traditional Bacterial Indicators and Physiological Diversity Measures for Monitoring Stream Condition, C. W. Hendricks, C. L. Bracken, and A. K. Harding, Abstract from the ASM 100th General Meeting, May 21- 25, 20004179Comparison of Two Kinds of Biolog Microplates (GN and ECO) in their Ability to Determine the Microbial Community Dynamics in Activated Sludge Systems, J. Van Heerden, M. M. Ehlers, and T. E. Cloete, Abstract from the ASM 100th General Meeting, May 21-25, 20004178Biolog for the Determination of Microbial Diversity in Activated Sludge Systems, J. Van Heerden, M. M. Ehlers, and T. E. Cloete, Abstract from the ASM 100th General Meeting, May 21-25, 20004177Microbial Community Structure and Function in the Spermosphere as Affected by Soil and Seed Type, J.S. Buyer, D.P. Roberts, and E. Russek-Cohen, Canadian Journal Microbiology, 1999, v.45, pp. 138-144.4176Biolog Analysis and Fatty Acid Methyl Ester Profiles Indicate that Pseudomonad Inoculants that Promote Phytoremediation Alter the Root-associated Microbial Community of Bromus Biebersteinii, S.D. Siciliano, and J.J. Germida, Soil Biol. Biochem., 1998, v.30, pp. 1717-1723.4175Microbial Community Analysis: A Kinetic Approach to Constructing Potential C Source Utilization Patterns, J.E. Lindstrom, R.P. Barry, and J.F. Braddock, Soil Biol. Biochem., 1998, v.30, pp. 231-239.4174Metabolic Profiling as a Means of Characterizing Plant-associated Microbial Communities, R.J. Ellis, I.P. Thompson, and M.J. Bailey, Federation of European Microbiological Societies, 1995, v.16, pp. 9-18.4173Can Soil Quality Trends Explain the "Organic Transition" Effect?, R. Ford Denison, T.K. Hartz, E.A. Martini, D.C. Bryant, R.F. Norris, D.M. Barrett, and J.S. Buyer, Soil Quality in the California Environment, 1998-1999 Annual Report, pp. 28-414172Sustainability of Long-term Reclaimed Wastewater Irrigated Cropland: A Field of Evaluation of Soil Quality, A.C. Chang, L. Wu, D.E. Crowley, B. McCullough-Sanden, Z. Wang, and A. Wang, Soil Quality in the California Environment, 1998-1999 Annual Report, pp. 1-94171Microbial Community Diversity and Resilience in Relation to Heavy Metal Contamination of Soils, D.E. Crowley, M. Reynolds, and C.H Yang, Soil Quality in the California Environment, 1998-1999 Annual Report, pp. 10-174169Comparison of Two Kinds of Biolog Microplates (GN and ECO) in their Ability to Distinguish Among Aquatic Microbial Communities, Keun-Hyung Choi and Fred C. Dobbs, Journal of Microbiological Methods, 1999, v.36, pp. 203-213.4168Risk Assessment, Microbial Communities, and Pollution-Induced Community Tolerance, Michiel Rutgers and Anton M. Breure, Human and Ecological Risk Assessment,1999, v.5, pp. 661-670.4167Effects of Heavy Metal Contamination and Remediation on Soil Microbial Communities in the Vicinity of a Zinc Smelter, J.J. Kelly and R.L. Tate, III, Journal of Environmental Quality, 1998, v.27, pp. 609-617.4165Functional and Structural Responses of a Degradative Microbial Community to Substrates with Varying Degrees of Complexity in Chemical Structure, S. Karthikeyan, G.M. Wolfaardt, D.R. Korber, and D.E. Caldwell, Microbial Ecology, 1999, v. 38, pp. 215-224.4164Microbial Diversity and Community Structure of Postdisturbance Forest Soils as Determined by Sole-Carbon-Source Utilization Patterns, W.J. Staddon, L.C. Duchesne, and J.T. Trevors, Microbial Ecology, 1997, v.34, pp. 125-130.4163A Method of Profiling Microbial Communities Based on a Most-Probable-Number Assay That Uses BIOLOG Plates and Multiple Sole Carbon Sources, M. Gamo and T. Shoji, Applied and Environmental Microbiology, 1999, v.65, pp. 4419-4424.9-44244162A Microtiter Plate Procedure for Evaluating Fungal Functional Diversity, J.K. Dobranic and J.C. Zak, Mycologia, 91 (5), 1999, pp. 756-7654161Defining Soil Quality in Terms of Microbial Community Structure, M.K. Firestone, T. Balser, and D. Herman, Soil Quality in the California Environment 1997-1998, pp. 41-514160Defining Soil Quality in Terms of Microbial Community Structure, M.K. Firestone, T. Balser, and D. Herman, Soil Quality in the California Environment 1996-1997, pp. 48-544159Comparison of Parental and Transgenic Alfalfa Rhizosphere Bacterial Communities Using Biolog GN Metabolic Fingerprinting and Enterobacterial Repetitive Intergenic Consensus Sequence-PCR (ERIC-PCR), G.D. Di Giovanni, L.S. Watrud, R.J. Seidler, and F. Wildmer, Microbial Ecology, pgs. 129-139, 19994158Biolog for the Determination of Microbial Diversity In Phosphate Removing and Non-Phosphate Removing Activated Sludge Systems, Juanita van Heerden, Marthie M. Ehlers, and T.E. Cloete, Abstracts of the 99th General Meeting of the American Society for Microbiology, 19994144Pollution-Induced Community Tolerance (PICT) in Terrestrial Microbial Systems, M. Rutgers, B.S. Wind, and A.M. Breure, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 1994136Comparison of Different Multisubstrate Utilization Assays for Functional Description of Microbial Communities, M.V. Gorlenko and J.L. Garland, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug.19984135Variation in Composition and Structure of Soil Microbial Communities in Michigan Old Fields, W.L. Goodfriend and L.C. Broughton, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug.19984134The Study of Eubacterial Community Change Over Time With Respect to Pollutant Pressure, M.S. Grivan, L.A. Glover, K. Killham, J.I. Prosser, and C. Campbell, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug.19984133An Indicator for the Functional Diversity of Microbial Populations, A.M. Breure, B.S. Wind, and M. Rutgers, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug.19984130Dynamics of Bacterial Communities Induced by Varying Water Tables and Seasons in the Everglades, N. Esiobu, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19984129Kinetic Analyses of the Biolog Community Profile to Characterize Changes in Species Richness in Two Freshwater Aquatic Communities, A.M. Comeau and C.R. Bell, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19984128Analysis of Aquatic Bacterial Communities Using Biolog GN and Eco Plates, K.H. Choi and F.C. Dobbs, New Frontiers – Program and Abstracts- Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19984115Effect of P-Nutrition and PGPR Application on Potential C-Source Utilization by Rhizosphere Communities, S. Ruppel and A. Gransee, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19984111The Impact of Oxygen Tension on Cell Density and Metabolic Diversity of Microbial Communities in Alkane Degrading Continuous-Flow Cultures, L. Berthe-Corti, A. Burns, Abstract from Microbial Ecology, Germany, May 19984110Developing Microbial Indicators of Ecological Condition in Wadeable Oregon Streams, C.W. Hendricks, H.M.K. Campbell, and A.T. Herlihy, Abstracts of the 98th Meeting of the American Society of Microbiology, 1998, N-1434109The Use of Carbon Substrate Utilization Patterns in Environmental and Ecological Microbiology, A. Konopka, L. Oliver, A. Konopka, L. Oliver, R.F. Turco, Jr., Microbial Ecology, 1998, pp. 103-115.4108Microbial Diversity of Artificial Mesocosms Receiving Primary Clarified Wastewater, K. R. Hench, A. J. Sexston, and G. K. Bissonnette, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, Q-2804107Rapid Community-level Physiological Profiling Using Fluorescine Diacetate (FDA), Michael V. Gorlenko, Jay L. Garland, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-93.4106Utility of BIOLOG GN Microplates to Characterize Complex Epiphytic Microbial Communities, A. H. Lindell, and J. V. McArthur, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-146.4105Functional Diversity and Similarities Between Soil Bacterial Communities in a Southeastern Riparian Wetland, Donald M. Stoeckel, Mary S. Miller-Goodman, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-110.4104Effect of Acclimation to Hydrocarbon Pollutant on Microbial Community Structure and Degradative Performance, D. C. Wilkie, D. R. Korber, G. M. Wolfaardt, and A. Estrada, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-105.4103Bioavailability of BTEX in Unsaturated Soil: Effects of Microbial Community Structure and Cell Attachment to Soil Particles, A. L. Barkovskii, A. Rihana, P. Adriaens, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-88.4102Microbial Community Assessment in Zinc Impacted Soils: Biolog and Phospholipid Fatty Acid Analyses, J. J. Kelly and R. L. Tate, Rutgers, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-694101Characterization of Microbial Communities from Trichloroethylene-Contaminated Groundwater, A. M. Glucksman, H. D. Skipper, R. I. Brigmon, C. B. Fliermans, W. C. Bridges, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-764100Impact of Vegetation Control and Fertilization on the Structure of Soil Microbial Communities in a White Pine (Pinus strobus L.) Plantation, W. J. Staddon*, L. C. Duchesne, and J. T. Trevors, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-84099Effects of Soil Properties on Bracken Fern (Pteridium aquilinum L.) Rhizosphere Microbial Community Metabolic Profiles, L. S. Watrud, S. Maggard, T. Shiroyama, M. G. Johnson and G. Di Giovanni, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-54098Analysis of BIOLOG GN Substrate Utilization Patterns by Microbial Communities, K. Smalla, U. Wachtendorf, H. Heuer, W. Liu, and L. Forney, Applied and Environmental Microbiology, 1998, v.64, pp. 1220-1225.4097Use of GC-FAME and BIOLOG Techniques as Measures of Structural and Functional Diversity of Soil Microbial Communities. C.E. Pankhurst, B.G. Hawke, C.A. Kirkby, B.D. Harch, R.L. Correll and B.M. Doube, Abstracts from Australian Society of Microbiology, Adelaide, 1997.4096Impacts of Fertilizers on the Humus Layer Microbial Community Structure of Scots Pine Stands Growing Along a Gradient of Heavy Metal Pollution. H. Fritze, T. Pennanen and P. Vanhala, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4095The Relationship Between Microbial Biomass and Functional Diversity Along a Chihuahuan Desert Watershed. J. Zak, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4094Combined Application of BIOLOG and MIS/SHERLOCK for Identification of Bacterial Isolates from Hydrocarbon Polluted Soils. L. Wünsche, C. Härtig, H.O. Pucci and W. Babel, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4093Biolog Fingerprints of Soil Bacteria: Incubation Conditions and Sensitivity. Winding and N.B. Hendriksen, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4092Quantitative Approaches to Assess Functional Attributes of Bacterial Communities: A Multivariate Perspective of Natural and Anthropogenic Disturbance. M.R. Willig, S.B. Cox and D.L. Moorhead, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4091Biolog Profiles of Model Microbial Communities: Single Point Analysis vs. Kinetic Profiles. L. Verschuere, V. Fievez, and W. Verstraete, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4090Biolog Metabolic Fingerprints for Clustering Marine Oligotrophic Bacteria From Polar Regions. T.L. Tan, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4089Community Changes During BIOLOG Incubation Followed by TGGE or DGGE. K. Smalla, U. Wachtendorf and H. Heuer, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4088Space: An Added Dimension to Substrate Utilisation by Fungi. K. Ritz and J.W. Crawford, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4087Physiological Diversity of Heterotrophic Bacterial Communities From Different Depths of a Soil Profile. N.R. Parekh, K. Everaerts, B. Lagacherie and G. Soulas, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4086Comparison of GC-FAME and BIOLOG Approaches to Analysis of Bacterial Communities Associated with the Decomposition of Organic Substrates in Two Contrasting Soils. C.E. Pankhurst, W. Meech and C.A. Kirkby, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4085Changes in Microbial Community After Maize Straw Application Detected by Biolog and PLFA Patterns. A. Palojärvi, S. Sharma, A. Rangger, M. von Lützow and H. Insam, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4084Total Diversity of Soil Bacteria is High: How does this Correlate to the Diversity of the Population of Culturable Soil Bacteria? L. Řvreĺs and V. Torsvik, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4083The Effects of Long-Term Land Management on Soil Functional Diversity. S.M. O’Flaherty, T.W. Willison, P. Tlustos, J.C. Baker and D.V. Murphy, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4082Effect of Added Organic Materials on Carbon Source Utilization and Enzyme Activity Patterns of Three Arable Soils. M. Niemi, P. Vanhala and U. Virta, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4081Changes in Bacterial Community Composition and Diversity Associated with Litter Decay: Patterns of Succession on a Decomposing Substrate. D. L. Moorhead, W.S. Davis and M.R. Willig, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4080Strain and Function Stability in Gnotobiotic Reactors. A.L. Mills and J.E. Bouma, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4079Characterization of Heterotrophic Microbial Communities by Means of the Biolog System, I. Kersters, L. Van Vooren, L. Verschuere, L. Vauterin, A. Wouters, J. Mergaert, W. Verstraete and J. Swings, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4078Elevated CO2 Changes Substrate Utilization Profiles in Alpine Grassland, C. Mayr C and H. Insam, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4077Microbial Community Analysis and Phenotypic Fingerprinting of a Selenium Contaminated Sludge System, C. Magyarosy, J. Keasling, P. Gadzinski and B.R. Bochner, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4076Microbial Population Changes During Bioremediation, M.M. Laine, and K.S. Jorgensen, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4075Substrate Utilization Patterns of Bacteria in Neutral and Acidic Beech Forest Soils, S. Kreitz and T.H. Anderson, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4074Impacts of T4-Lysozyme Expression of Transgenic Potatoes Analysed by Catabolic Profiling, H. Heuer, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4073Evaluating Community-Level Biolog Results by Area Under the Curve, J.B. Guckert, G.J. Carr, T.D. Johnson, B.G. Hamm, D.H. Davidson and Y. Kumagai, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4072Profiling of Microbial Community Structure Under Upland Grasslands: Comparison of BIOLOG, PFLA and Community DNA Approaches, S.J. Grayston, C.D. Campbell, K. Ritz, B.S. Griffiths, C.D. Clegg, R.D. Bardgett and J.L. Mawdsley, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4071The Influence of Microbial Community Structure and Function on Community-Level Physiological Profiles, J.L. Garland and B.A. Hungate, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4070A Novel Approach to Assessing the Catabolic Diversity of Soil Microbial Communities. B. Degens and J. Harris, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4069Use of Rhizosphere C Sources to Fingerprint Microbial Communities and Methods of Data Analysis. C.D. Campbell, S.J. Grayston and D. Hirst, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4068Comparison of Biolog and FAME Analysis of Soil Microbial Communities. J.S. Buyer, L. Lengnick, L.E. Drinkwater and D. Roberts, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4067Influence of Simulated Microgravity and Other Factors on Population and Functional Dynamics of Gnotobiotic Microbial Communities. J.E. Bouma and A.L. Mills, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4066The Biolog System – Suitable for Environmental Applications? Barry R. Bochner, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4065Sources of Variability in BIOLOG Assays of Soil Microbial Communities: Spatial and Analytical. T.C. Balser and M.K. Firestone, Abstracts from Submeco Conference, Innsbruck, Austria, October, 1996.4064Ecofunctional Enzymes of Microbial Communities in Ground Water. C.B. Fliermans, M.M. Franck, T.C. Hazen, R.W. Gorden, FEMS Microbiology Reviews, August, 1997, pp. 1-11.4063Analysis and Interpretation of Community-Level Physiological Profiles in Microbial Ecology. Jay L. Garland, FEMS Microbiology Ecology, 1997, v.24, pp. 289-300.4061Monitoring Biolog Patterns and r/K-Strategists in the Intensive Culture of Artemia Juveniles. L. Verschuere, J. Dhont, P. Sorgeloos, W. Verstraete, Journal of Applied Microbiology, 1997, v.83, pp. 603-612.4060Separation Power of the 95 Substrates of the BIOLOG System Determined in Various Soils. Wolfgang Hitzl, Andrea Rangger, Shobha Sharma, Heribert Insam, FEMS Microbiology Ecology, 1997, v.22, pp. 167-174.4059Using the Gini Coefficient with BIOLOG Substrate Utilisation Data to Provide an Alternative Quantitative Measure for Comparing Bacterial Soil Communities. Bronwyn D. Harch, Raymond L. Correll, Wendy Meech, Clive A. Kirkby, Clive E. Pankhurst, Journal of Microbiological Methods, 1997, v.30, pp. 91-101.4058Application of Multivariate Analysis of Variance and Related Techniques in Soil Studies with Substrate Utilization Tests. Wolfgang Hitzl, Michael Henrich, Markus Kessel, Heribert Insam, Journal of Microbiological Methods, 1997, v.30, pp. 81-89.4057Statistical Comparisons of Community Catabolic Profiles. Ekkehard Glimm, Holger Heuer, Bert Engelen, Kornelia Smalla, Horst Backhaus, Journal of Microbiological Methods,1997, v.30, pp. 71-80.4056Statistical Analysis of the Time-Course of Biolog Substrate Utilization. Christine A. Hackett, Bryan S. Griffiths, Journal of Microbiological Methods, 1997, v.30, pp.63-69.4055Evaluation of Community-Level Catabolic Profiling using BIOLOG GN Microplates to Study Microbial Community Changes in Potato Phyllosphere. Holger Heuer, Kornelia Smalla, Journal of Microbiological Methods, 1997, v.30, pp. 49-61.4054Use Of Rhizosphere Carbon Sources In Sole Carbon Source Tests To Discriminate Soil Microbial Communities. C.D. Campbell, S. J. Grayston, D.J. Hirst, Journal of Microbiological Methods, 1997, v.30, pp. 33-41.4053Microbial Functional Activity During Composting of Chlorophenol-Contaminated Sawmill Soil. M. Minna Laine, Heikki Haario, Kirsten S. Jorgensen, Journal of Microbiological Methods, 1997, v.30, pp. 21-32.4052Comparison of Substrate Utilization Assay and Fatty Acid Analysis of Soil Microbial Communities. Jeffrey S. Buyer, Laurie E. Drinkwater, Journal of Microbiological Methods, 1997, v.30, pp. 3-11.4051Substrate Utilization Tests in Microbial Ecology. A Preface to the Special Issue of the Journal of Microbiological Methods. Heribert Insam, Journal of Microbiological Methods, 1997, v.30, pp. 1-2.4050Microbial Communities, Functional Versus Structural Approaches, H. Insam and A. Rangger, Springer-Verlag, Germany, 1997.4049Bacterial Population Dynamics in a Meromictic Lake, P. Tuomi, T. Torsvik, M. Heldal, and G. Bratbak, Applied and Environmental Microbiology, June, 1997, v.63, pp. 2181-2188.4048Comparison of Activated Sludge Microbial Communities Using Biolog MicroPlates™, S.K. Kaiser, J.B. Guckert, and D.W. Gledhill, Proceedings of the Second International Conference on Microorganisms in Activated Sludge and Biofilm Processes, July, 1997, p.49-56.4047Community and Metabolic Analysis of Activated Sludge Microbial Habitat, D.Y. Kumagail, J.B. Guckert, R.J. Larson, E.N. Namkung, Japan Society on Water Environment, March, 1997.4046Microbial Remediation of Soils Co-contaminated With 2,4-D and Cadmium, T.M. Roane and I.L. Pepper, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.524.4045Methods for Determining Chlorine Impact on River Biofilms, S. Satic, D.R. Korber, G.M. Wolfaardt, and D.E. Caldwell, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.508.4044Differences Between Diazotrophic Assemblages From the Rhizospheres of Salt Marsh Grasses, C.E. Bagwell. C.R. Lovell, Y.M. Piceno, and A.L. Ashburne, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.4154043The Relative Importance of Inoculum Source, Plant Type, and Plant Age on Rhizosphere Community Development, J.L. Garland and K.L. Cook, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.414.4042Effect of Simulated Microgravity on Populations and Functional Activity of a Gnotobiotic Microbial Community, J.E. Bouma and D.L. Pierson, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.413.4041Molecular Analysis of Diversity Represented by a Metabolic Culture Assay of a Soil Microbial Community, G.D. Di Giovanni, F. Widmer, RJ. Seidler, and L.S. Watrud, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.412.4040Changes in Soil Microbial Diversity in Response to Bioventing, J.L. Rogers and S.C. Long, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.406.4039Polyphasic Characterization of Microbial Communities in Damaged Environments, T. Torok, S. Goldman, and J.C. Hunter-Cevera, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.403.4038Discerning Changes in Rhizoshere Microbial Populations Due to an Introduced GEM Using BIOLOG and Multivariate Statistical Analysis, J.V. Gagliardi, J.S. Angle, and J.S. Buyer, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.400.4037A Comparison of the Effects of Amendments on Microbial Communities in Agricultural Soils, J.H. Middleton and L.R. Cooperband, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.398.4036An Evaluation of Subtyping of Methods for the Identification of Fecal Pollution Sources in Lake Sidney Lanier, Georgia, A. Buchan, M. Alber, M.A. Moran, R.E. Hodson, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.395.4035Bacteriological Studies on White-Band Disease of Acropora cervicornis, G.W. Smith and K.B. Ritchie, Biology and Geology of Coral Reefs, September, 1995.4034Phenotypic Fingerprinting of Microbial Communities in Wastewater Treatment Systems, L. Victorio, K. A. Gilbride, D. G. Allen, and S. N. Liss, Water Research, 1966, v.30, pp. 1077-1086.4033Microbial Community Structure in a Mine Tailings Reclamation Project, O.F. Seastone, C.A. Zabinski, B.W. Wielinga and J.E. Gannon, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p. 345.4032The Biolog Technique as a Method to Assess Microbial Population Shifts in Agricultural Soils, S.E. Ahrabi-Fard, B.A.D. Hetrick and J.E. Jurgenson, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p. 460.4031Community Analysis by Biolog: Curve Integration for Statistical Analysis of Activated Sludge Microbial Habitats, J. B. Guckert, G. J. Carr, T. D. Johnson, B. G. Hamm, D. H. Davidson, and Y. Kumagai, Journal of Microbiological Methods, 1996, v.27:2-3, p. 183-187.4030The Effect of Grazing on Soil Microbial Biomass and Community on Alpine Pastures, H. Insam, A. Rangger, M. Henrich, and W. Hitzl, Phyton Special Issue "Achenkirch II", 1996, v.36, p. 205-216.4029Changes in Functional Abilities of the Microbial Community During Composting of Manure, H. Insam, K. Amor, M. Renner, C. Crepaz, Microbial Ecology, 1996, v.31, p. 77-87.4028Determination of Substrate Utilization Patterns of Soil Microbial Communities: An Approach to Assess Population Changes After Hydrocarbon Pollution, L. Wunsche, L. Bruggeman, and W. Babel, FEMS Microbiology Ecology, 1995, v.17, p. 295-306.4027Impact of Carbon Flooding on the Metabolic Diversity of Microbial Communities in Soils, D. A. Bossio and K. M. Scow, Applied and Environmental Microbiology, 1995, v.61, p. 4043-4050.4026Examination of the Effectiveness of Biolog in Determining Microbial Community Patterns in Soils Amended with Compost or E. coli, B.F. Rogers, S.L. Murphy, J.J. Kelly, and R.L. Tate III, Abstracts of the General Meeting of the American Society for Microbiology, 1996, p. 335.4025Biolog Analysis of Zinc Contaminated Soil Microbial Communities, J. J. Kelly and R. Tate III, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p. 337.4024The Suitability of the Biolog Automated Microbial Identification System for Assessing the Taxonomical Composition of Terrestrial Bacterial Communities, L. Wunsche, and W. Babel, Microbiological Research, 1966 v.151, p. 133-143.4023Analytical Approaches to the Characterization of Samples of Microbial Communities Using Patterns of Potential C Source Utilization, J. L.Garland, Soil Biol. Biochem, 1996, v.28:2, p.213-221.4022Patterns of Potential C Source Utilization By Rhizosphere Communities, J. L. Garland, Soil Biol. Biochem, 1996, v.28:2, p.223-230.4021Structure and Activity of Subsurface Microbial Communities in a Sandy Coastal Plain Aquifer, L. Lancaster, and A.L. Mills, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 348.4020Analysis of Factors Affecting the Accuracy, Reproducibility, and Interpretation of Microbial Community Carbon Source Utilization Patterns, S.K. Haack H. Garchow, M.J. Klug, and L.J. Forney, Applied and Environmental Microbiology, 1995, v.61, p. 1458-1468.4019Microbial Diversity in the Rhizospheres of Different Tree Species, S.J. Grayston, C.D. Campbell, and D. Vaughan, Soil Biota-Management in Sustainable Farming Systems. (eds. Parkhurst CE, Doube BM, Gupta WSR, Adelaide), 1994, p. 155-157.4018Functional Diversity of Microbial Communities: A Quantitative Approach, J. Zak, M. Willig, D. Moorhead, and H. Wildman, Soil Biology and Biochemistry, 1994, v.26, p. 1101-1108.4017Fingerprinting Bacterial Soil Communities Using Biolog Microtitre Plates, A. Winding, Beyond the Biomass, British Society of Soil Science, 1994, p. 85-94.4016A Community-Level Physiological Approach for Studying Microbial Communities, J.L. Garland and A.L. Mills, Beyond the Biomass, British Society of Soil Science, 1994, p. 77-83.4015Analysis of Changes in Stream Biofilm Community Structure and Function in Response to Environmental Perturbation Using Whole-Community Fatty Acid Methyl Ester Profiles and Carbon-Substrate Utilization Patterns, K. Haack, H. Garchow, W. Sobczak, L.J. Forney, and M.J. Klug, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.352.4014Temporal Patterns of Community-Level Carbon Source Utilization in the Rhizosphere of Wheat and Potato, J.L. Garland, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 349.4013Metabolic and Community DNA Similarities of Natural Bacterioplankton Communities in the North American Great Lakes, D. Pascoe and R.E. Hicks, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 352.4012Dynamics and Functional Stability of a Gnotobiotic Microbial Community, J.E. Bouma and A.L. Mills, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 349.4011The Development of a Defined Microbial Community in a Materially Closed Ecosystem, D.C. Obenhuber and E.B. Rodgers, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 397.4010Biolog Microtiter Plates for Metabolic Analysis of Soil Microbial Communities, A. Winding and N.B. Hendriksen, Abstract #P2-02-34, Symposium on Microbial Ecology, 1992, Barcelona.4009Comparison of Community-Level and Isolate-Based Methods for Determining Microbial Community Structure, J.L. Garland, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p. 3974008Population and Functional Dynamics of a Gnotobiotic Microbial Community, J.E. Bouma, and A.L. Mills, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 339.4007Reisolation of a Defined Microbial Community From a Four Year Old Materially Closed Ecosystem, D.C. Obenhuber, and A.B. Brittain, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 341.4006Ecofunctional Enzymes of Microbial Communities in Groundwater, C.B. Fliermans, M.M. Franck, T.C. Hazen, and R.W. Gorden, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 347.4005Microbial Ecology of a Subarctic Taiga Crude Oil Spill: Activity and Metabolic Diversity, J.E. Lindstrom, J.F. Braddock, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 355.4004Characterization of Microbial Populations From Drinking Water Filters Using Whole-Community Fatty Acid Methyl Ester Profiles, Carbon-Source Utilization Patterns and DNA Amplification Fingerprinting, D.M. Moll, and R.S. Summer, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 337.4003Physiological and Phylogenetic Analysis of a Bacterial Community, C. Hoch, M. Mau, E. Moore, and K.N. Timmis, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 337.4002The Effects of Inoculum Source and Richness on Community-Level Patterns of Carbon Source Utilization in Rhizosphere Microcosms, J.L. Garland, K.L. Cook, and C.A. Loader, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 341.4001Classification and Characterization of Heterotrophic Microbial Communities on the Basis of Patterns of Community-Level Sole-Carbon-Source Utilization, J.L. Garland and A.L. Mills, Applied and Environmental Microbiology, 1991, v.57, p. 2351-2359. - Biodegradation, Soil and Water MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 5
Biodegradation, Soil and Water Microbiology5109Aerobic Biodegradation of 2,22'-Dithiodibenzoic Acid Produced from Dibenzothiophene Metabolites, R.F. Young, S.M. Cheng, and P.M. Fedorak, Applied and Environmental Microbiology, 2006, v.72, pp. 491-496.5108Isolation and Characterization of Phenanthrene-Degrading Sphingomonas paucimobilis Strain ZX4, Y. Xia, H. Min, G. Rao, Z-M. Lv, J. Liu, Y-F. Ye, and X-J. Duan, Biodegradation, 2005, v.16, pp. 393-402.5107Metabolic Responses of Microbiota to Diesel Fuel Addition in Vegetated Soil, M.R.T. Palmroth, U. Munster, J. Pichtel, and J.A. Puhakka, Biodegradation, 2005, v.16, pp. 91-101.5106Isolation and Characterization of Pseudomonas sp. Strain HF-1 Capable of Degrading Nicotine, A. Ruan, H. Min, X. Peng, and Z. Huang, Research in Microbiology, 2005, v.156, pp. 700-706.5105Effects of Lead and Cadmium Nitrate on Biomass and Substrate Utilization Pattern of Soil Microbial Communities, M. Akmal, X. Jianming, L. Zhaojun, W. Haizhen, and Y. Huaiying, Chemosphere, 2005, v.60, pp. 508-514.5104Structural and Functional Diversity of Microbial Communities from a Lake Sediment Contaminated with Trenbolone, an Endocrine-Disrupting Chemical, V. Radl, K. Pritsch, J.C. Munch, and M. Schloter, Environmental Pollution, 2005, v.137, pp. 345-353.5103Shewanella decolorationis sp. nov., a Dye-Decolorizing Bacterium Isolated from Activated Sludge of a Waste-Water Treatment Plant, M. Xu, J. Guo, Y. Cen, X. Zhong, W. Cao, and G. Sun, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 363-368.5102Application of Enterococcus spp. as a Bacterial Source Tracking Tool, J.E. Thomas, C. Lang, V. Gannon, J. Byrne, and B. Selinger, Abstract from the International Union of Microbiological Societies, July 2005.5101Pollution-Induced Community Tolerance of Soil Microbes in Response to a Zinc Gradient, M.R.H. Davis, F-J. Zhao, and S. P. McGrath, Environmental Toxicology and Chemistry, 2004, v.23, pp. 2665-2672.5100Molecular Diversity of Tannic Acid Degrading Bacteria Isolated from Tannery Soil, S.P. Chowdhury, S. Khanna, S.C. Verma, and A.K. Tripathi, Journal of Applied Microbiology, 2004, v.97, pp. 1210-1219.5099Heterotrophic Community-Level Physiological Profiles of Domestic Wastewater Following Treatment by Small Constructed Subsurface Flow Wetlands, K.R. Hench, A.J. Sexstone, and G.K. Bissonnette, Water Environment Research, 2004, v.76, pp. 468-473.5098Effects of Antibiotics on Soil Bacterial Communities - Comparing Molecular Techniques and Community Analyses, H. Schmidt, P. van Beelen, and E. Smit, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.5097Fluorescent Pseudomonas Isolates from Mississippi Delta Oxbow Lakes: In Vitro Herbicide Biotransformations, R.M. Zablotowicz, M.A. Locke, R.E. Hoagland, Environmental Toxicology, 2001, v.16, pp. 9-19.5096Use of Selective Inhibitors and Chromogenic Substrates to Differentiate Bacteria Based on Toluene Oxygenase Activity, W.K. Keener, M.E. Watwood, K.D. Schaller, M.R. Walton, J.K. Partin, W.A. Smith, and S.R. Clingenpeel, Journal of Microbiological Methods, 2001, v.46, pp. 171-185.5095Comparison of Microbial and Meiofaunal Community Analyses for Determining Impact of Heavy Metal Contamination, R.J. Ellis, B. Neish, M.W. Trett, J.G. Best, A.J. Weightman, P. Morgan, and J.C. Fry, Journal of Microbiological Methods, 2001, v.45, pp. 171-185.5094Structure of Microbial Communities in Activated Sludge: Potential Implications for Assessing the Biodegradability of Chemicals, L.J. Forney, W-T. Liu, J.B. Guckert, Y. Kumagai, E. Namkung, T. Nishihara, and R.J. Larson, Ecotoxicology and Environmental Safety, 2001, v.49, pp. 40-53.5093Carbon Source Utilization and Antibiotic Resistance Analysis (Disk Diffusion) as Methods for Source Tracking in Texas Surface Water, P.J. Brown, J. C. Stewart, C.A. Branecky, and J.B. Mott, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.5092Speciation of Environmental Enterococcus and Related Species: Comparison of Four Commercial Phenotypic Methods with Biochemical Testing, M.H. Zhowandai, C. McGee, D.F. Moore, J.B. Mott, M. Von Winckelmann, K. Patton, J.C. Stewart, P.J. Brown, and D.M. Ferguson, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.5091Antibiotic Resistance Gene Exchange Between Coliform Bacteria in the Upper Susquehanna River, D.A. Miller, Jr., M.E. Allen, and H. Coll, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.5090Characterization and Purification of Acrylamidase Isolated from the Acrylamide-Degrading Bacterium, Ralstonia eutropha, M-S. Cha and G.H. Chambliss, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.5089Survival of Isolates from an Aerobic Digester in Sludge Fractions, Abstract from the ASM 105th General Meeting June 5th- June 9th 20055088Collimonas fungivorans gen. nov., sp. nov., a Chitinolytic Soil Bacterium with the Ability to Grow on Living Fungal Hyphae,J. Wieste de Boer, H.J. Leveau, G.A. Kowalchuk, Paulien J.A. Klein Gunnewiek, E.C.A. Abeln, M.J. Figge, K. Sjollema, J.D. Janse, and J.A. van Veen, International Journal of Systematic and Evolutionary Microbiology, 2004, v.54, pp. 857-864.5087Cloning and Expression of a Novel Esterase Gene cpoA from Burkholderia cepacia,C.H. Kim, J.H. Lee, J.H. Heo, O.S. Kwon, H.A. Kang, and S.K. Rhee, Journal of Applied Microbiology, 2004, v.96, pp. 1306-1316.5086Gene Sequences of the pcpB Gene of Pentachlorophenol-Degrading Sphinogomonas chlorophenolica Found in Nondegrading Bacteria,V.M. Saboo and M.A. Gealt, Canadian Journal of Microbiology, 1998, v.44, pp. 667-675.5085Carbon Source Utilization Profiles as a Method to Identify Sources of Faecal Pollution in Water, C. Hagedorn, J.B. Crozier, K.A. Mentz, A.M. Booth, A.K. Graves, N.J. Nelson, and R.B. Reneau Jr., Journal of Applied Microbiology, 2003, v.94, pp. 792-799.5084Evaluation of Genetic Diversity Among Pseudomonas citronellolis Strains Isolated from Oily Sludge-Contaminated Sites, D. Bhattacharya, P.M. Sarma, S. Krishnan, S. Mishra, and B. Lal, Applied and Environmental Microbiology, 2003, v.69, pp. 1435-1441.5083Characterization of Cr(VI)-Resistant Bacteria Isolated from Chromium-Contaminated Soil by Tannery Activity, C. Viti, A. Pace, and L. Giovannetti, Current Microbiology, 2003, v.46, pp. 1-5.5082Characterization of Serratia Isolates from Soil, Ecological Implications and Transfer of Serratia proteamaculans subsp. quinovora Grimont et al. 1983 to Serratia quinivorans corrig., sp.nov, K.E. Ashelford, J.C. Fry, M.J. Bailey, and M.J. Day, International Journal of Systematic and Evolutionary Microbiology, 2002, v.52, pp. 2281-2289.5081Physiological and Cellular Responses of the 2,4-D Degrading Bacterium, Burkholderia cepacia YK-2, to the Phenoxyherbicides 2,4-D and 2,4,5-T, Y. Cho, H. Kahng, C. Kim, J.J. Kukor, and K. Oh, Current Microbiology, 2002, v.45, pp. 415-422.5080Physiological and Genetic Characterization of Fluorescent Pseudomonas Associated with Cantharellus cibarius, J.I. Rangel-Castro, J.L. Levenfors, and E. Danell, Canadian Journal of Microbiology, 2002, v.48, pp. 739-748.5079Isolation of Bacterial Strains that Produce the Endocrine Disruptor, Octylphenol Diethoxylates, in Paddy Fields, E. Nishio, Y. Ichiki, H. Tamura, S. Morita, K. Watanabe, and H. Yoshikawa, Biosci. Biotechnol. Biochem., 2002, v.66, pp. 1792-1798.5078Evaluation of Plant Growth Promoting and Colonization Ability of Endophytic Diazotrophs from Deep Water Rice, S.C. Verma, J.K. Ladha, and A.K. Tripathi, Journal of Biotechnology, 2001, v.91, pp. 127-141.5077Reconnaissance of Hydrology, Water Quality, and Sources of Bacterial and Nutrient Contamination in the Ozark Plateaus Aquifer System and Cave Springs Branch of Honey Creek, Delaware County, Oklahoma, March 1999-March 2000, Water – Resources Investigation Report 00-4210, U.S. Department of Interior, U.S. Geological Survey, pp. 21-395076Fatty Acid Methyl Ester (FAME) and Biolog Determination of Microbial Community Profiles in a Coupled Bioreactor/Biofilter During Removal of Volatile Acetone and Toluene B. F. Hugo, M. A. LaBeau, S. T. Bagley, Abstract from the ASM 100th General Meeting, May 21-25, 20005075Biodegradation of Glycerol Trinitrate and Pentaerythritol Tetranitrate by Agrobacterium radiobacter, G. F. White, J. R. Snape, and S. Nicklin, Applied and Environmental Microbiology, Feb. 1996, pp. 637-6425074Biolog ID as Compared to 16S Ribosomal RNA ID for Environmental Isolates from the Deep Subsurface, P. C. McKinsey, D. J. Addis, K. B. Maxwell, M. M. Franck, C. B. Fliermans, Abstract from the ASM 100th General Meeting, May 21-25, 20005073Resuscitation of Microorganisms After Gamma Irradiation, P.S. Amy, B.J. Pitonzo, and M. Rudin, Radiation Research, 1999, v.152, pp. 71-75.5071Isolation from Soil of Aerobic Chemoheterotrophic Bacteria Capable of Decomposing Methanethiol and Hydrogen Sulfide, H. Sato, S. Takakuwa, T. Kimura, H. Shimomoto, T. Hirose, and Y. Moriyama, Microbes and Environments, 1999, v.14, pp.1– 999.5070Microbial Cooperation in the Remediation of Co-Contaminated Systems, T.M. Roane and I.L. Pepper, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19985069Developing Microbial Indicators of Ecological Condition in Wadeable Oregon Streams, C. W. Hendricks, H. M. K. Campbell, and A. T. Herlihy, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-1435068Microbial Ecology of Selenium Damaged Environments, C. Edmerson, X. Zeng, and T. Leighton, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-635067Use of GFP as a Conservative Fluorescent Marker to Examine the Protective Interactions between Benzoate Resistant and Sensitive Strains of Pseudomonas spp. In Static and Flowing Environments, S. Karthikeyan,* G. M. Wolfaardt, D. R. Korber, and D. E. Caldwell, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, N-59.5066Rapid Phenotypic Radiation of a Soil Bacterium Maintained for 1000 Generations in Two Different Environments, M. S. Riley, E. Seymour, L. J. Forney, T. L. Marsh, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, R-435065Profiling Populations of Aquatic Bacteria Using NTZ-500© Numerical Taxonomy Program, M. A. Holder-Franklin, N. Ocampo, C. Allen and L. J. Wuest, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, Q-2555064The Use of Microbial Metal-Resistance in the Bioremediation of Metal:Organic Contaminated Systems, T. M. Roane and I. L. Pepper, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, P-225063Metabolic and Genotypic Fingerprinting of Fluorescent Pseudomonads Associated with Douglas Fir - Laccaria bicolor Mycorrhizosphere, P. Frey, P. Frey-Klett, J. Garbaye, O. Berge, and T. Heulin, Applied and Environmental Microbiology, 1997, v.63, pp. 1852-1860.5062Dominantly Growing Bacteria in Malodorless Domestic Sewage Treatment Tanks and Their Biochemical Characteristics. Yukio Doi, Boon-Sing Lee, Ryozo Iriye, Shin-ichiro Tabata and Koichi Tateishi, Antibact. Antifung. Agents, 1998, v.26, pp. 53-63.5061Coaggregation Amongst Aquatic Biofilm Bacteria. C.M. Bushwell, Y.M. Herlihy, P.D. Marsh, C.W. Keevil, and S.A.Leach. Journal of Applied Microbiology, 1997, v.83, pp. 477-484.5060Metabolic and Genotype Fingerprinting of Fluorescent Pseudomonads Associated with the Douglas Fir-Laccaria bicolor Mycorrhizosphere. Pascal Frey, Pascale Frey-Klett, Jean Garbaye, Odile Berge and Thierry Heulin, Applied and Environmental Microbiology, 1997, pp. 1852-1860.5059Viability and Metabolic Features of Bacteria Indigenous to a Contaminated Aquifer. C.M. McCarthy and L. Murray, Microbial Ecology, 1996, v.32, pp. 305-321.5058Cyanide Degradation under Alkaline Conditions by a Strain of Fusarium solani from Contaminated Soils, A. Dumestre, T. Chone, J.M. Portal, M. Gerard, and J. Berthelin, Applied and Environmental Microbiology, 1997, v.63, pp. 2729-2734.5057Phylogenetic and Biochemical Characterization of an Atrazine-Mineralizing Bacterial Isolate, D.M. Stamper, K.B. Hallberg, M. Radosevich, S.J. Traina, and O.H. Tuovinen, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.525.5056Isolation and Characterization of Benzene and Toluene-Degrading Bacteria from Pristine and Disturbed Tropical Soils,.E. Acosta, D. Badillo, S. Cresop, J. Mattei, C. Rodriguez, V. Gomez and A. Massol-Deya, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p.337.5055Carbon Source Utilization of Soil Extracted Microorganisms as a Tool to Detect the Effects of Soil Supplemented with Genetically Engineered and Non-engineered Corynebacteruim glutamicum and a Recombinant Peptide at the Community Level, W. Vahjen, J. Munch, and C. C. Tebbe, FEMS Microbiology Ecology, 1995, v.18, p. 317-328.5054Isolation and Characterization of a Facultatively Aerobic Bacterium That Reductively Dehalogenates Tetrachloroethene cis - 1,2 - Dichloroethene, P. K. Sharma, and P. L. McCarty, Applied and Environmental Microbiology, 1996, v.62:3, p. 761-765.5053Production of an Extracellular Polysaccharide by Agrobacterium sp DS3 NRRL B-14297 Isolated from Soil, C.T. Hou, J.Aa. Ahlgren, W. Brown, and J.J. Nicholoson, Journal of Industrial Microbiology, 1996, v.16, p. 129-1335052Sediments as Reservoirs for Fecal Coliforms in Oak Creek, Arizona, C.E. Keys, P. Moraca, T. Harrison and G. Southam, Abstracts from the 96th General Meeting of the American Society for Microbiology, 1996, p. 469.5051Genetic and Phenotypic Analysis of Denitrifiers Isolated From Subsurface of Prairie and Agricultural Soil, L. Halda, C.W. Rice, J. Leach, and F. Louws, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 346.5050Cyanuric Acid-Degrading Bacteria From S-Triazine Contaminated Groundwater, R.M. Larsen, K.L. Watkins, and J. Bauld, Abstracts of the Australian Society for Microbiology, Microbiology Australia, September, 1995,v.16:4, PO3.7.5049Polyphasic Characterization of a Suite of Bacterial Isolates Capable of Degrading 2,4-D, N.L. Tonso, V.G. Matheson, and W.E. Holben, Microbial Ecology, 1995, v.30, p. 3-24.5048Use of Sole Carbon Source Utilization Patterns to Detect Changes in Soil Microbial Communities affected by Cu, Ni and Zn, C.D. Campbell, J. Van Gelder, M.S. Davidson, and C.M. Cameron, International Conference on Heavy Metals in the Environment, 1995, v.2, p. 447-450.5047Isolation and Identification of Bacteria From a Kraft Pulp Mill Equalization Basin, K. Kruawal, R.D. Ellender, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 478.5046Rapid Screening for Bacterial Phenotypes Capable of Biodegrading Anionic Surfactants: Development and Validation of a Microtitre Plate Method, C. Lee, N. J. Russell, and G.F. White, Microbiology, 1995, v.141, p.2801-2810.5045Assessment of Hydrocarbon Remediation by Multiple Prokaryotic Bioassays, S.P. O'Connell, R.M. Lehman, and G.A. Bala, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 476.5044Isolation and Characterization of Microorganisms Recovered From a Petroleum Hydrocarbon Contaminated Site, G.T. Kleinheinz, U. Kohlweyer, W.P. St. John, and S.T. Bagley, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 408.5043Comparison of Identification Systems for Classification of Bacteria Isolated From Water and Endolithic Habitats within the Deep Subsurface, P.S. Amy, D.L. Haldeman, D. Ringelberg, D.H. Hall, and C. Russell, Applied and Environmental Microbiology, 1992, v.58, pp. 3367-3373.5042Desulfurization of Dibenzothiophene to 2-Hydroxybiphenyl by Some Newly Isolated Bacterial Strains, P. Wang, and S. Krawiec, Archives of Microbiology, 1994, v.161, p. 266-271.5041Variations in Phenotypic Characters of Type 021N From Activated Sludge Systems, R. Hudson, C. Williams, R.J. Seviour, and J.A. Soddell, Water Science Technology, 1994, v.29, p. 143-147.5040Microbiological Investigations of Corrosion Damages in Aircraft, A. Hagenauer, R. Hilpert, and T. Hack, Werkstoffe und Korrosion, 1994, v.45, p. 355-360.5039Synergistic Growth of Two Members from a Mixed Microbial Consortium Growing on Biphenyl, A.D. Davison, H. Csellner, P. Karuso, and D.A. Veal, FEMS Microbiology Ecology, 1994, v.14, p. 133-146.5038Alternative Method for Rapidly Screening Microbial Isolates for Their Potential to Degrade Volatile Contaminants, J.M. Strong-Gunderson and .V. Palumbo, Journal of Industrial Microbiology, 1994, v.13, p.361-366.5037Isolation and Identification of Microorganisms Responsible for 1,4-Dioxane Mineralization, R.M. Cowan, M.D. Morin, S.M. Sock, C.P.L. Grady, Jr., and T.A. Hughes, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 466.5036Response of Bacterial Populations to Petroleum Hydrocarbon Contamination in Tropical Soils, F. Robert and S. Israel, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994. p. 395.5035Biodegradation of Petroleum Hydrocarbons in Soil Slurries by Pseudomonas Isolates, D.K. Jain and I. Cord, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 396.5034Enrichment and Kinetic Characterization of Microbial di-Methyl Ketone and di-Ethyl Ether Degradation Using a Respirometric Technique, B.F. Smets, R.E. Hammervold, T.O. Overcamp, and C.P.L.J. Grady, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.463.5033Biodegradability Assessment of Isocyanate Based Polymers, I. Odocha, S. Wang, I. Horacek, S. Wong, J. Kresta, and J. Graves, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.463.5032Dynamic Interaction of Cyanide and Ammonia Utilization in Bioremediation of Cyanide-containing Waste Water, C.S. Lin, J.K. Liu, C.J. Mao, I.D. Chang, S.H. Kao, C.H. Liu, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.462.5031The Effect of 2, 4-D on the Metabolic Potential of a Soil Microbial Community, G.D. Di Giovanni, N.A. Sinclair, I.L. Pepper, and R. Arnold, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.452.5030Evidence for the Prominence of Different Well Characterized Gram-Negative Mesophilic Bacteria in the Thermophilic (50-70C) Environment of Composts, M.L. Droffner, and W.F. Brinton, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.435.5029Analysis of Changes in Stream Biofilm Community Structure and Function in Response to Environmental Perturbation Using Whole-Community Fatty Acid Methyl Ester Profiles and Carbon-Substrate Utilization Patterns, K. Haack, H. Garchow, W. Sobczak, L.J. Forney, and M.J. Klug, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.352.5028Landfill Heterotrophic Bacteria, M.A. Holder-Franklin, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.350.5027Rapid Screening for Bacteria Capable of Degrading Toxic Organic Compounds, R.W. Gorden, T.C. Hazen, and C.B. Fliermans, Journal of Microbiological Methods, 1993, v.18, p. 339-347.5026Use of Biolog Technology to Assess Remediation and Groundwater Perturbations, C.B. Fliermans, J.E. Wear, M.M. Franck, P.C. McKinsey, and T.C. Hazen, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.329.5025Cluster Analysis of Black Plug Layer Microbial Communities, S.R. Lyon and B.H. Olson, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p. 347.5023Large Scale Analysis of Microbial Populations and Abiotic Factors in Aquifers, Z.V.A., J.D. Harrington, K.W. Neely, J.M. Harrington, S.T. Kellogg, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.346.5022Microbial Habitat Analysis of Eutrophicated Aquifers Feeding a Pristine Alpine Lake, Magrini, V.J., G.C. Rothrock, and S.T. Kellogg, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994, p.320.5021A Study of Microbial Communities in Lead-Contaminated Soils, T.M. Roane, and S.T. Kellogg, Abstracts of the 94th General Meeting of the American Society for Microbiology, 1994. p.4235020Biodegradation Profiles of Microbial Communities in Wastewater Treatment Systems, L. Victorio, D.G. Allen, K.A. Gilbride and S.N. Liss, Abstracts of the Joint Annual Meeting of the Society for Industrial Microbiology and the Canadian Society of Microbiologists, 1993, p.70.5019Physiological Profiles of Predominant Heterotrophic Bacterial Populations in a Municipal Landfill, M.A. Holder-Franklin, S. Georges, B. Mangiola, and C. Bezaire, Abstracts of the Joint Annual Meeting of the Society for Industrial Microbiology and the Canadian Society of Microbiologists, 1993, p.69.5018A Most Probable Number Assay Using BIOLOG-GN Microtiter Plates for the Study of Ground Water Microbial Communities, J.E. Wear, P.C. McKinsey, M.M. Franck, H.G. Findley, M.V. Enzien, C.B. Fliermans, and T.C. Hazen, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 314.5017Immunologic Techniques as Tools to Characterize the Subsurface Microbial Community at a TCE Contaminated Site, C.B. Fliermans, J.M. Dougherty, M.M. Franck, P.C. McKinzey, and T.C. Hazen, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.313.5016The Detection of Temporal Changes in the Physiological Characteristics of the Activated Sludge in an Industrial Wastewater Treatment System, S.V. Barbee, and F.K. Pfaender, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.426.5015Microbial Community Analysis in Heavy Metal Contaminated Soils, T.M. Roane, and S.T. Kellog, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.388.5014Phenotypic Fingerprinting of Biologically-Based Wastewater Treatment Systems, L. Victorio, D.G. Allen, and S.N. Liss, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.425.5013Comparison of Heterotrophic Microbial Communities Related to Deep Subsurface Sample Acquisition, R.M. Lehman and F.S. Colwell, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 418.5012Technique Identifies Bacteria that Degrade Wastes, J. Krieger, Chemical & Engineering News, 1992, p. 36.5011Polyphasic Taxonomic Characterization of Diverse 2,4-Dichlorophenoxyacetic Acid (2,4-D) Degrading Populations of Soils, N.L. Tonso, V.G.M. Calabrese and W.E. Holben, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p.341.5010Microbial Community Nutritional Analysis in a Basalt Aquifer, M. Zheng and S.T. Kellogg, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p.247.5009New Method for Rapidly Determining Microbial Utilization of Volatile Contaminants, J.M. Strong-Gunderson, A.V. Palumbo, and S.O. Scarborough, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p.371.5008Screening of Microbes from Deep-Subsurface Environments for the Ability to Degrade Nonvolatile Organic Contaminants, B.D. Lee, R.M. Lehman, and F.S. Colwell, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p.384.5006Development and Use of Field Application Vectors to Express Nonadaptive Foreign Genes in Competitive Environments, C.A. Lajoie, S.Y. Chen, K.C. Oh, and P.F. Strom, Applied and Environmental Microbiology, 1992, v.58, p. 655-663.5005Involvement of a Chlorobenzoate-Catabolic Transposon, Tn5271, in Community Adaptation to Chlorobiphenyl, Chloroaniline, and 2,4-Dichlorophenoxyacetic Acid in a Freshwater Ecosystem, R.R. Fulthorpe and R.C. Wyndham, Applied and Environmental Microbiology, 1992, v.58, p. 314-325.5004Microbial Population Diversity, J. Bell and D. Demezas, Insights (publication of The Center for Microbial Ecology at Michigan State University), 1991, v.1, p. 6-11.5003Use of Cellular Fatty Acids and Carbon Source Utilization Profiles for Examining the Similarities of Bacteria From Natural Habitats, M. Klug and H. Garchow, Microbial Ecology Forum, Poster Session, Michigan State University, May, 1991.5002Physiological Diversity and Distributions of Heterotrophic Bacteria in Deep Cretaceous Sediments of the Atlantic Coastal Plain, J.K. Fredrickson, D.L. Balkwill, J.M. Zachara, S.W. Li, F.J. Brockman, and M.A. Simmons, Applied and Environmental Microbiology, 1991, v.57, p. 402-411.5001Transfer and Expression of the Catabolic Plasmid pBRC60 in Wild Bacterial Recipients in a Freshwater Ecosystem, R.R. Fulthrope and R.C. Wyndham, Applied and Environmental Microbiology, 1991, v.57, p. 1546-1553. - Food MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 6
Food Microbiology6030A Chromogenic Plating Medium for the Isolation and Identification of Enterobacter sakazakii from Foods, Food Ingredients, and Environmental Sources, L. Restaino, E.W. Frampton, W.C. Lionberg, and R.J. Becker, Journal of Food Protection, 2006, v.69, pp. 315-322.6028DNA Based Classification of Food Associated Enterobacteriaceae Previously Identified by Biolog GN Microplates, C. Olsson, S. Ahrne, B. Pettersson, and G. Molin, Systematic and Applied Microbiology, 2004, v.27, pp. 219-2286027Identification of Leuconostoc Strains Isolated from Kimchi Using Carbon-Source Utilization Patterns,J.S. Lee, C.O. Chun, M. Hector, S.B. Kim, B.K. Park, Y.J. Joo, H.J. Lee, C.S. Park, J.S. Ahn, Y.H. Park, and T.I. Mheen, The Journal of Microbiology, 1997, v.35, pp. 10-14.6026Classification of Isolates Originating from Kimchi Using Carbon-Source Utilization Patterns,J.S. Lee, C.O. Chun, M.C. Jung, W.S. Kim, H.J. Kim, M. Hector, S.B. Kim, C.S. Park, J.S. Ahn, Y.H. Park, and T.I. Mheen, Journal of Microbiology and Biotechnology, 1997, v.7, pp. 68-74.6025Composition and Physiological Profiling of Sprout-Associated Microbial Communities, A. Matos, J.L. Garland, and W.F. Fett, Journal of Food Protection, 2002, v.65, pp. 1903-1908.6024Resistance of Bacterial Isolates from Poultry Products to Therapeutic Veterinary Antibiotics, D.H. Boothe, and J.W. Arnold, Journal of Food Protection, 3002, v.66, No. 1, pp. 94-102.6023Nutrient Substrates Used by Bacterial Isolates from the Poultry Processing Environment, D.H. Boothe, and J.W. Arnold, 2002 Poultry Science, v.81, pp. 1392-1405.6022Application of the MicroLog System, Reprint from: The European Food & Drink Review, Summer 2001.6021Detection of Verocytotoxin-Producing Escherichia coli O157 by Polymerase Chain Reaction Assay After Immunomagnetic Separation-Plating, S. Ueda and Y. Kuwabara, Biocontrol Science, 2001, v.6, pp. 43-47.6019Energy Sources of Non-starter Lactic Acid Bacteria Isolated from Cheddar Cheese, A.G. Williams, S.E. Withers, and J.M. Banks, International Dairy Journal, 2000, v.10, pp. 17-236018Amino Acid Fermentation in Non-starter Lactobacillus spp. Isolated from Cheddar Cheese, J.D. Tammam, A.G. Williams, J. Noble, and D. Lloyd, The Society for Applied Microbiology, 2000, v.30, pp. 370-3746017A Numerical Taxonomic Study of the Pseudomonas Flora Isolated from Poultry Meat, I. Arnaut-Rollier, L. Vauterin, P. De Vos, D.L. Massart, A. Devriese, L. De Zutter, and J. Van Hoof, Journal of Applied Microbiology, 1999, v.87, pp. 15-28.6016Evaluation of Accuracy and Repeatability of Identification of Food-Borne Pathogens by Automated Bacterial Identification Systems, Joseph A. Odumeru, Marina Steele, Lynne Fruhner, Carolyn Larkin, Jiangdong Jiang, Elroy Mann, and W. Bruce McNab, Journal of Clinical Microbiology, 1999, v.37, pp. 944-949.6014Energy Sources of Non-Starter Lactic Acid Bacteria, JA.G. Williams and S.E. Withers, Poster.6013Comparison of Commercially Available Kits with Standard Methods for Detection of Salmonella Strains in Foods, Katsuyuki Hanai, Mikio Satake, Hisao Nakanishi and Kasthuri Venkateswaran, Applied Environment Microbiology, February, 1997, v.63, pp. 775-778.6012Rapid Methods For Identification Of Lactic Acid Bacteria, S.M. Freund, M.L. Tamplin, H.L. Trenk, and C.I. Wei, Abstracts of the 84th Annual Meeting IAMFES, Florida, July, 1997.6011Spoilage Bacteria of Fresh Broiler Chicken Carcasses, S.M. Russel, D.L. Fletcher, and N.A. Cox, Poultry Science, 1996, v.75, p. 2041-2047.6010Metabolic Fingerprint Patterns & Listeria monocytogenes, N. Marquet Van Der Mee, V. Siquier, and A. Audurier, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1996, p. 438.6009Development of a 24hr Assay (E. coli SELeCT) for the Isolation, Quantification and Confirmation of E. coli O157:H7 in Poultry and Red Meat, D. T. Ingram, C. G. Rigakos, D. Rollins, E.T. Mallinson, L. Carr, and S. W. Joseph, Poster presented at the 96th General Meeting of the American Society for Microbiology, 1996.6008Bacterial Survey of Domestic Kitchen Cellullose Sponges and Cotton Dishcloths, C. E. Enriquez, R. Enriquez-Gordillo, D. I. Kennedy, and C. P. Gerba, Journal of Food and Environmental Sanitation, 1996, v.17, p. 20-24.6007Isolation, Enumeration, and Identification of Gram-Positive Cocci from Frozen Crabmeat, R.D. Ellender, L. Huang, S.L. Sharp, and R.P. Tettleton, Journal of Food Protection, 1994, v.58, p.853-857.6006Isolation of Aeromonads From Aquatic Foods in Taiwan, D.Y.C. Shih, C.L. Lai, H.C. Wong, and J.Y. Wang, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 392.6005Assessment of Some Commercially Available Automated and Manual Systems for Identification of Food-borne Yeasts, A.D. Hocking, G.H. Fleet, W. Praphailong, and L. Baird, Third International Workshop on Standardization of Methods for the Mycological Examination of Foods, 1994, p. 16.6004Enumeration of Obesumbacterium proteus in Brewery Yeasts and Characterization of Isolated Strains Using Biolog GN MicroPlates and Protein Fingerprinting, J.L. Fernandez, W.J. Simpson and T.M. Dowhanick, Letters in Applied Microbiology, 1993, v.17. p. 292-296.6003Comparison of Nucleic Acid Hybridization Assays and Biochemical Characterization Tests for the Confirmation of Listeria monocytogenes, J.L. Johnson and C.P. Lattuada, Journal of Food Protection, 1993, v.56, p. 834-840.6002Current Research on Listeria monocytogenes in Foods: an Overview, J.M. Farber, Journal of Food Protection, 1993, v.56, p. 640-643.6001Novel Method for Characterization of Listeria spp. Using the Biolog GP MicroPlate, J.L. Johnson, C.P. Lattuada, B. Bochner, Abstract of Presentation at the International Listeria Congress, Copenhagen, Denmark, April, 1992. - Microbial ID, Taxonomy, and MiscellaneousBibliography of Publications on Biolog Applications
Updated April 2006 Section 7
Microbial ID, Taxonomy, and Miscellaneous7075Biolog: Modern Phenotypic Microbial Identification, B.R. Bochner, Encyclopedia of Rapid Microbiological Methods, 2006, v.2, Ch. 3, pp. 55-73.7074Acaricomes phytoseiuli gen. nov., sp. nov., Isolated from the Predatory Mite Phytoseiulus persimilis, R. Pukall, P. Schumann, C. Schütte, R. Gols, and M. Dicke, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 465-469.7073Chryseobacterium soldanellicola sp. nov. and Chryseobacterium taeanense sp. nov., Isolated from Roots of Sand-Dune Plants, M.S. Park, S.R. Jung, K.H. Lee, M-S. Lee, J.O. Do, S.B. Kim, and K.S. Bae, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 433-438.7072Patulibacter minatonensis gen. nov., sp. nov., a Novel Actinobacterium Isolated Using an Agar Medium Supplemented with Superoxide Dismutase, and Proposal of Patulibacteraceae fam. nov., Y. Takahashi, A. Matsumoto, K. Morisaki, and S. Omura, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 401-406.7071Thalassomonas loyana sp. nov., a Causative Agent of the White Plague-Like Disease of Corals on the Eilat Coral Reef, F.L. Thompson, Y. Barash, T. Sawabe, G. Sharon, J. Swings, and E. Rosenberg, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 365-368.7070Bacillus macauensis sp. nov., a Long-Chain Bacterium Isolated from a Drinking Water Supply, T. Zhang, X. Fan, S. Hanada, Y. Kamagata, and H.P. Fang, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 349-353.7069Pseudovibrio ascidiaceicola sp. nov., Isolated from Ascidians (Sea Squirts), Y. Fukunaga, M. Kurahashi, K. Tanaka, K. Yanagi, A. Yokota, and S. Harayama, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 343-347.7068Methylobacterium adhaesivum sp. nov., a Methylotrophic Bacterium Isolated from Drinking Water, V. Gallego, M.T. García, and A. Ventosa, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 339-342.7067Krokinobacter gen. nov., with Three Novel Species, in the Family Flavobacteriacea, S.T. Khan, Y. Nakagawa, and S. Harayama, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 323-328.7066Myceligenerans crystallogenes sp. nov., Isolated from Roman Catacombs, I. Groth, P. Schumann, B. Schütze, J.M. Gonzalez, L. Laiz, M-L. Suihko, and E. Stackebrandt, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 283-287.7065Shewanella halifaxensis sp. nov., a Novel Obligately Respiratory and Denitrifying Psychrophile, J-S. Zhao, D. Manno, C. Leggiadro, D. O'Neil, and J. Hawari, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 205-212.7064Stenothermobacter spongiae gen. nov., sp. nov., a Novel Member of the Family Flavobacteriaceae Isolated from a Marine Sponge in the Bahamas, and Emended Description of Nonlabens tegetincola, S.C.K. Lau, M.M.Y. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, M. Wu, P-K. Wong, J.R. Pawlik, and P-Y. Qian, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 181-185.7063Culturable Phylogenetic Diversity of the Phylum 'Bacteroidetes' from River Epilithon and Coastal Water and Description of Novel Members of the Family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. and Persicivirga xylanidelens gen. nov., sp. nov., L.A. O'Sullivan, J. Rinna, G. Humphreys, A.J. Weightman, and J.C. Fry, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 169-180.7062Jannaschia seosinensis sp. nov., Isolated from Hypersaline Water of a Solar Saltern in Korea, D.H. Choi, H. Yi, J. Chun, and B.C. Cho, International Journal of Systematic and Evolutionary Microbiology, 2006, v.56, pp. 45-49.7061Phylogenetic and Functional Diversity of Bacterioplankton during Alexandrium spp. Blooms, M.M. Sala, V. Balague, C. Pedras-Alio, R. Massana, J. Felipe, L. Arin, H. Illoul, and M. Estrada, FEMS Microbiology Ecology, 2005, v.54, pp. 257-67.7060Molecular Characterisation of Xanthomonas Strains Isolated from Aroids in Mauritius, M.H.R. Khoodoo, F. Sahin, M.F. Donmez, and Y. Jaufeerally Fakim, Systematic and Applied Microbiology, 2005, v.28, pp. 366-380.7059Pontibacter actiniarum gen. nov., sp. nov., a Novel Member of the Phylum 'Bacteroidetes', and Proposal of Reichenbachiella gen. nov. as a Replacement for the Illegitimate Prokaryotic Generic name Reichenbachia Nedashkovskaya et al. 2003, O.I. Nedashkovskaya, S.B. Kim, M. Suzuki, L.S. Shevchenko, M.S. Lee, K.H. Lee, M.S. Park, G.M. Frolova, H.W. Oh, K.S. Bae, H-Y. Park, and V.V. Mikhailov, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2583-2588.7058Gramella portivictoriae sp. nov., a Novel Member of the Family Flavobacteriaceae Isolated from Marine Sediment, S.C.K. Lau, M.M.Y. Tsoi, X. Li, I. Plakhotnikova, S. Dobretsov, P-K. Wong, and P-Y. Qian, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2497-2500.7057Deinococcus deserti sp. nov., a Gamma-Radiation-Tolerant Bacterium Isolated from the Sahara Desert, A. de Groot, V. Chapon, P. Servant, R. Christen, M. Fischer-Le Saux, S. Sommer, and T. Heulin, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2441-2446.7056Cyclobacterium amurskyense sp. nov., a Novel Marine Bacterium Isolated from Sea Water, O.I. Nedashkovskaya, S.B. Kim, M.S. Lee, M.S. Park, K.H. Lee, A.M. Lysenko, H.W. Oh, V.V. Mikhailov, and K.S. Bae, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2391-2394.7055Thalassobius mediterraneus gen. nov., sp. nov., and Reclassification of Rugeria gelatinovorans as Thalassobius gelatinovorus comb. nov., D.R. Arahal, M.C. Macian, E. Garay, and M.J. Pujalte, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2371-2376.7054Methylobacterium isbiliense sp. nov., Isolated from the Drinking Water System of Sevilla, Spain, V. Gallego, M.T. Garcia, and A. Ventosa, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2333-2337.7053Characterization of Alkaliphilic Bacillus Strains Used in Industry: Proposal of Five Novel Species, Y. Nogi, H. Takami, and K. Horikoshi, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 2309-2315.7052Paucibacter toxinivorans gen. nov., sp. nov., a Bacterium that Degrades Cyclic Cyanobacterial Hepatotoxins Microcystins and Nodularin, J. Rapala, K.A. Berg, C. Lyra, R. Maarit Niemi, W. Manz, S. Suomalainen, L. Paulin, and K. Lahti, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 1563-1568.7051Nereida ignava gen. nov., sp. nov., a Novel Aerobic Marine c-Proteobacterium that is Closely Related to Uncultured Prionitis (Alga) Gall Symbionts, M.J. Pujalte, M.C. Macian, D.R. Arahal, W. Ludwig, K.H. Schleifer, and E. Garay, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 631-636.7050Assessment of Self-Organizing Maps to Analyze Sole-Carbon Source Utilization Profiles, J. Leflaive, R. Cereghino, M. Danger, G. Lacroix, L. Ten-Hage, Journal of Microbiological Methods, 2005, v.62, pp. 89-102.7049Proline-Based Modulation of 2,4-Diacetylphloroglucinol and Viable Cell Yields in Cultures of Pseudomonas fluorescens Wild-Type and Over-Producing Strains, P.J. Slininger and M.A. Shea-Andersh, Applied Microbiology and Biotechnology, 2005, v.68, pp. 630-638.7048Porphyromonas uenonis sp. nov., a Pathogen for Humans Distinct from P. asaccharolytica and P. endodontalis, S.M. Finegold, M-L. Vaisanen, M. Rautio, E. Eerola, P. Summanen, D. Molitoris, Y. Song, C. Liu, and H. Jousimies-Somer, Journal of Clinical Microbiology, 2004, v.42, pp. 5298-5301.7047One-to-One Comparison: A New Approach to Analyzing Metabolic Diversity Data, C. San Miguel, M. Dulinski, and R.L. Tate, III, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.7046Mycobacterium-Rhizosphere Interactions and Effects on PAH Degradation, R.D. Child, C. Miller, and A.J. Anderson, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.7045Anoxyphototroph Purple Non-Sulfur Bacteria Isolated from Water Reservoirs of Puerto Rico, K.Y. Flores-Burgos, A.J. Toro-Ramos, I.M. Almodovar-Rodgriguez, N. Figueroa-Matias, C. Rios-Velazquez, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.7044Isolation and Partial Characterization of a Purple Pigment Producing Bacterium from the Tennessee Copper Basin, A.M.l. Gaston, A. Ejiofor, T. Johnson, Abstract from the ASM 105th General Meeting June 5th-June 9th 2005.7043Microbial Testing in Support of Aseptic Processing, A.M. Cundell, Pharmaceutical Technology , 2004, pp. 56-66 .7042Aquaspirillum dispar Hylemon et al. 1973 and Microvirgula aerodenitrificans Patureau et. al. 1998 are Subjective Synonyms, I. Cleenwerck, M. De Wachter, B. Hoste, D. Janssens and J. Swings, International Journal of Systematic and Evolutionary Microbiology, 2003, v.53, pp. 1457-1459.7041Kineococcus radiotolerans sp. nov., a Radiation-Resistant, Gram-Positive Bacterium, R.W. Phillips, J. Wiegel, C.J. Berry, C. Fliermans, A.D. Peacock, D.C. White, and L.J. Shimkets, International Journal of Systematic and Evolutionary Microbiology, 2002, v.52, pp. 933-938.7040Strain Diversity within a Microbial Collection, D. DiTullio, N. Rocheleau, M.K. Talbot, W. Millett, J. McAlpine, and P. Robakiewicz, The Journal of Antibiotics, 2002, v.55, pp. 899-903.7039Chlorxanthomycin, a Fluorescent, Chlorinated, Pentacyclic Pyrene from a Bacillus sp., A. Magyarosy, J.Z. Ho, H. Rapoport, S. Dawson, J. Hancock, and J.D. Keasling, Applied and Environmental Microbiology, 2002, v.68, pp. 4095-4101.7038A Comparative Evaluation of Five Typing Techniques for Determining the Diversity of Fluorescent Pseudomonads, S.L. Dawson, J.C. Fry, and B.N. Dancer, Journal of Microbiological Methods, 2002, v.50, pp. 9-22.7037Taxonomic Characterization of Ochrobactrum sp. Isolates from Soil Samples and Wheat Roots, and Description of Ochrobactrum tritici sp. nov. and Ochrobactrum gringonense sp. nov., M. Lebuhn, W. Achouak, M. Schloter, O. Berge, H. Meier, M. Barakat, A. Hartmann, and T. Heulin, International Journal of Systematic and Evolutionary Microbiology, 2000, v.50, pp. 2207-2223.7036Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975AL is a Later Subjective Synonym of Pseudomonas putida (Trevisan 1889) Migula 1895AL, J. Chun, M. Rhee, J. Han, and K. S. Sook Bae, International Journal of Systematic and Evolutionary Microbiology, 2001, v.51, pp. 169-170.7034Comparison of API 20NE and Biolog GN Identification Systems Assessed by Techniques of Multivariate Analyses, Jaak Truu, Ene Talpsep, Eeva Heinaru, Ulrich Stottmeister, Helmuth Wand, and Ain Heinaru, Journal of Microbiological Methods, 1999, v.36, pp. 193-201.7033Pig and Goat Blood As Substitutes for Sheep Blood in Blood-Supplemented Agar Media, C. Anad, R. Gordon, H. Shaw, K. Fonseca, and M. Olsen, Journal of Clinical Microbiology, 2000, v.38, pp. 591-594.7032The Global Regulatory Protein FruR Modulates the Direction of Carbon Flow in Escherichia Coli, Tom M. Ramseier, Stefan Bledig, Valerie Michotey, Rita Feghali, and Milton H. Saier Jr., Molecular Microbiology, 19957030Burkholderia Caribensis sp. Nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique, Wafa Achouak, Richard Christen, Mohamed Barakat, Marie-Helene Martel, and Thierry Heulin, International Journal of Systematic Bacteriology, 19997029Inhibition of Capsule Production in Bacteria by Thioglycolate, A. Franco-Buff, P. Domenico, and B. R. Bochner, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, Q-677027Ability of Biolog and Biotype-100 Systems to Reveal Taxonomic Diversity of the Pseudomonads, P.A.D. Grimont, M. Vancanney, M. Lefevre, K. Vandemeulebroecke, L. Vauterin, R. Brosch, K. Kersters, and F. Grimont, Systematic Applied Microbiology, v.19, pp. 510-527.7026Polyphasic Taxonomy, a Consensus Approach to Bacterial Systematics, P. VanDamme, B. Pot, M. Gillis, P. DeVos, K. Kersters, and J. Swings, Microbiological Reviews, 1996, v.60. p. 407-438.7025Identification of Gram Negative Aerobic / Microaerophilic Rods with Four Automated and Semi-Automated Systems, M.E. Wilson, and N.E. Jackson, Abstracts and Poster of the 96th General Meeting of the American Society for Microbiology, 1996, p. 394.7024The Biolog MicroStation System and General Procedures for Identifying Environmental Bacteria and Yeast, B.R. Bochner, Automated Microbial Identification and Quantitation: Technologies for the 2000s, Wayne P. Olson, ed., Interpharm Press, 1996, p.13-51.7023Metabolic Taxonomy of over 1100 Species of Bacteria and Yeast based on Biolog MicroPlates, B.R. Bochner, Abstracts of The Australian Society for Microbiology, Microbiology Australia, September, 1995, v.16, PO3.15.7022Phenotypic Profiles for the Assessment and Identification of Microbial Diversity, B.R. Bochner, Abstracts of the Australian Society for Microbiology, Microbiology Australia, September, 1995, v.16, S21.4.7020Distribution of Alginate Genes in Bacterial Isolates from Corroded Metal Surfaces, W.H. Wallace, J.F. Rice, D.C. White, and G.S. Sayler, Microbial Ecology, 1994, v.27, p. 213-223.7019Phenotypic Characterisation of Acinetobacter Strains of 13 DNA-DNA Hybridisation Groups by Means of the Biolog System, A.T. Bernards, L. Dijkshoorn, J. Van der Toorn, B.R. Bochner, and C.P.A. Van Boven, Journal of Medical Microbiology, 1995, v.42, p. 113-119.7018Intraspecific Metabolic Diversity Among Strains of Burkholderia cepacia Isolated from Decayed Onions, Soils and the Clinical Environment, D.S. Yohalem, and J.W. Lorbeer, A. Van Leeuwenhoek Journal, 1994, v.65, p. 111-131.7017Use of the Biolog-System for Rapid Characterization and Classification of Coryneform Isolates, K. Martin, I. Groth, J. Meyer, and P. Schumann, Abstracts of the 1993 FEMS Conference on Microbial Taxonomy, Granada, Spain, 1993.7016Denitrification under various aeration conditions in Comamonas sp., strain SGLY2, D. Patureau, J. Davison, N. Bernet, and R. Moletta, FEMS Microbiology Ecology 1994, v.14, p. 71-78.7015Gellan-related Polysaccharides and the Genus Sphingomonas, T. Pollack, Journal of General Microbiology, 1993, v.139, p. 1939-1945.7014Classification of Acinetobacter Strains by the Biolog System, A.T. Bernards, J. van der Toorn, B.R. Bochner, L. Dijkshoorn, Abstract Presentation of FEMS Meeting, Granada, Spain, September, 1993, p.64.7013Microbes: Improved Methods for Recovering Bacteria from HPW Water, J.L. Clancy and L. Cimini, Ultrapure Water, 1991, p. 25-38.7012R & D 100 Awards: Biotechnology, R & D Magazine, October, 1991, p.44.7011Identification of Environmental Bacteria, B.R. Bochner, Pharmaceutical Manufacturing International, 1993, p.223-225.7010Comparison of the MIDI and BIOLOG Systems for Identification of Indoor Airborne Bacteria, L.E. Pifer, T.M. Bowen, J.R. Meldrum, and L.D. Stetzenbach, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.412.7009Characterization of Facultative Thermophilic Bacteria Isolated From the Air at Six Fiberglass Manufacturing Plants, D. Dewitt, and P. Stukus, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p.411.7008Identification of Glutaraldehyde-Resistant, Rapidly Growing Mycobacteria Based on Sole-Carbon-Source Utilization, C. Roberts, S. Guida, and H. Chan-Myers, Abstracts of the 92nd Meeting of the American Society for Microbiology, 1992, p.173.7007The Matrix Approach: Microbial Retention Testing of Sterilizing-Grade Filters with Final Parenteral Products, Part II, R.V. Levy, K.S. Souza, D.L. Hyde, S.M. Gambale, and C.B. Neville, Pharmaceutical Technology, 1991, v.15, p. 58-68.7006Pleiotropic Changes Resulting From Depletion of Era, an Essential GTP-binding Protein in Escherichia coli, C.G. Lerner and M. Inouye, Molecular Microbiology, 1991, v.5, p. 951-957.7005Efficient Ethanol Production from Glucose, Lactose, and Xylose by Recombinant Escherichia coli, F. Alterthum and L.O. Ingram, Applied and Environmental Microbiology, 1989, v.55, p. 1943-1948.7004"Breathprints" at the Microbial Level, B.R. Bochner, ASM News, 1989, v.55, p. 536-539.7003Sleuthing Out Bacterial Identities, B.R. Bochner, Nature, 1989, v.339, p. 157-158.7002New Methods Aid Microbial Identification, A. Klausner, Bio/Technology, 1988, v.6, p. 756.7001New Approaches to Monitoring Cells, J.L. Fox, Bio/Technology, 1987, v.5,p. 872. - Computer Programs/Statistical AnalysisBibliography of Publications on Biolog Applications
Updated April 2006 Section 8
Computer Programs/Statistical Analysis8002Presenting Science in Three Dimensions: a Review of Origin-3-D for Windows Version 2.88, J.C. Fry, Binary, 1994, v.6, p. 3-5.8001Software Review: Toward an Ideal Scientific Graphic System for IBM at Compatible Computers, J.C. Fry, Binary, 1993, v.5, p. 75-78. - Marine and Hypersaline MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 9
Marine and Hypersaline Microbiology9046Nereida ignava gen. nov., sp. nov., a Novel Aerobic Marine c-Proteobacterium that is Closely Related to Uncultured Prionitis (Alga) Gall Symbionts, M.J. Pujalte, M.C. Macian, D.R. Arahal, W. Ludwig, K.H. Schleifer, and E. Garay, International Journal of Systematic and Evolutionary Microbiology, 2005, v.55, pp. 631-636.9045Vibrio splendidus Biotype 1 as a Cause of Mortalities in Hatchery-Reared Larval Turbot, Scophthalmus maximus (L.), R. Thomson, H.L. Macpherson, A. Riaza, and T.H. Birbeck, Journal of Applied Microbiology, 2005, v.99, pp. 243-250.9044Bacterial Motility of Freshwater Isolates from the Kraus Wilderness Preserve, A.R. Robinson, L.S. Corthell, and L. Tuhela, Abstract from the ASM 105th General Meeting June 5th- June 9th 2005.9043Phenotypic Diversity Amongst Vibrio Isolates from Marine Aquaculture Systems, J. Vandenberghe, F.L. Thompson, B. Gomez-Gil and J. Swings, Aquaculture, 2003, v.219, pp. 9-20.9042Vibrio kanaloae sp. nov., Vibrio pomeroyi sp. nov. and Vibrio chagasii sp. nov., from Sea Water and Marine Animals, F.L. Thompson, C.C. Thompson, Y. Li, B. Gomez-Gil, J. Vandenberghe, B. Hoste, and J. Swings, International Journal of Systematic and Evolutionary Microbiology, 2003, v.53, pp. 753-759.9041New Methods for the Analysis of Binarized Biolog GN Data of Vibrio Species: Minimization of Stochastic Complexity and Cumulative Classification, M. Gyllenberg, T. Koski, P. Dawyndt, T. Lund, F. Thompson, B. Austin, and J. Swings, Systematic and Applied Microbiology , 2002, v.25, pp. 403-415.9040Vibrios Associated with Penaeus chinensis (Crustacea: Decapoda) Larvae in Chinese Shrimp Hatcheries, J. Vandenberghe, Y. Li, L. Verdonck, J. Li, P. Sorgeloos, H.S. Xu, and J. Swings, Aquaculture, 1998, v.169, pp. 121-132.9038Vibrio neptunius sp. nov., Vibrio brasiliensis sp. nov. and Vibrio xuii sp. nov., Isolated from the Marine Aquaculture Environment (Bivalves, Fish, Rotifers and Shrimps), F.L. Thompson, Y. Li, B. Gomez-Gil, C.C. Thompson, B. Hoste, K. Vandemeulebroecke, G.S. Rupp, A. Pereira, M.M. De Bem, P. Sorgeloos, and J. Swings, International Journal of Systematic and Evolutionary Microbiology, 2003, v.53, pp. 245-252.9037Microbial Diversity and Complexity in Hypersaline Environments: A Preliminary Assessment, C.D. Litchfield and P.M. Gillevet, Journal of Industrial Microbiology & Biotechnology, 2002, v.28, pp. 48-55.9036Vibrio trachuri Iwamoto et al. 1995 is a Junior Synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981, F.L. Thompson, B. Hoste, K. Vandemeulebroecke, K. Engelbeen, R. Denys, and J. Swings, International Journal of Systematic and Evolutionary Microbiology, 2002, v.52, pp. 973-976.9035A Detailed Phenotypic Characterisation of the Type Strains of Halomonas Species, J.A. Mata, J. Martinez-Canovas, E. Quesada, and V. Bejar, Systematic and Applied Microbiology, 2002, v.25, pp. 360-375.9034Viable Cytophaga-Like Bacterium in the 0.2 µm-Filtrate Seawater, H.E. Elsaied, J. Sato, and T. Naganuma, Systematic and Applied Microbiology, 2001, v.24, pp. 618-622.9033Comparative Metabolic Diversity in Two Solar Salterns, C.D. Litchfield, A. Irby, T.Kis-Papo, and A. Oren, Hydrobiologia, 2001, v.466, pp. 73-80.9032Relative Abundance and Species Composition of Gram-Negative, Aerobic Bacteria Associated with the Gut of Juvenile White Shrimp Litopenaeus vannamei Reared in Oligotrophic Well Water and Eutrophic Pond Water, S.M. Moss, B.R. LeaMaster, and J.N. Sweeney, Journal of the World Aquaculture Society, 2000, v.31, pp. 255-263.9031Luminous Bacteria Cultured from Fish Guts in the Gulf of Oman, John C. Makemson and Gregorio V. Hermosa, Jr., Luminescence 1999; 14:161-1689028Luminous Bacteria in Market Fish Guts from the Gulf of Oman, J.C. Makemson and G.V. Hermosa, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19989027Niche Differentiation of Shewanella Putrefaciens Populations from the Baltic as Revealed by Molecular and Metabolic Fingerprinting, F. Ziemke, I. Brettar, and M.G. Hofle, New Frontiers – Program and Abstracts – Eighth International Symposium on Microbial Ecology (ISME-98), Halifax, Canada 9-14 Aug. 19989026The Effect of Suspending Solution Supplemented with Marine Cations on the Oxidation of Biolog GN MicroPlateTM Substratres by Vibrionaceae Bacteria, L. Noble and J. Gow, Canadian Journal of Microbiology, 1998, v.44, pp. 251-258.9024Physiological Comparison of Bacterial Communities from Various Species of Scleractinian Corals, K.B. Ritchie and G.W. Smith, Abstract form the Proceedings of the 8th International Coral Reef Symposium, 1997, v.1.9023Caribbean Sea-fan Mortalities, G.W. Smith and L.D. Ives, Nature, 1996, v.383, p. 487.9022A Phenotypic Identification Scheme for Marine Luminous Bacteria Using Commercial Test Panels and a Non-Specialized Statistics Program, J. Makemson, Abstracts of the 96th General Meeting of the American Society for Microbiology, 1996, p. 344.9021Description of a New Polymer-Secreting Bacterium from A Deep-Sea Hydrothermal Vent, Alteromonas macleodii subsp. fijiensis, and Preliminary Characterization of the Polymer, G. Raguenes, P. Pignet, G. Gauthier, A. Peres, R. Christen, H. Rougeaux, G. Barbier, and J. Guezennec, Applied and Environmental Microbiology, 1996,v.62:1, p.67-73.9020Carbon-source Utilization Patterns of Coral-associated Marine Heterotrophs, K.B. Ritchie and G.W. Smith, Journal of Marine Biotechnology, 1995, v.3, pp. 105-107.9019Preferential Carbon Utilization by Surface Bacterial Communities from Water Mass, Normal, and White-band diseased Acropora cervicornis, K.B. Ritchie, and G.W. Smith, Molecular Marine Biology and Biotechnology. 1995, v.4, pp. 345-352.9018Bacterial Ecology of Selected Corals Following the 1994 South Central Bleaching Event, A. Jindal, K.B. Ritchie, R.L. Hayes, T.J. Goreau, and G.W. Smith, Proceedings of the 27th Meeting of the Association of Marine Labs, 1996.9017Bacteriological Studies on White-Band Disease of Acropora cervicornis, G.W. Smith and K.B. Ritchie, Biology and Geology of Coral Reefs, September, 1995.9016Grouping of Bacterial Heterotrophs from Sceractinian Corals Using Metabolic Potentials, K.B. Ritchie and G.W. Smith, Proceedings of the 26th Meeting of the Association of Marine Labs, 1995.9015Bacteria Associated with Bleached and Nonbleached Areas of Montastrea annularis, K.B. Ritchie, J.H. Dennis, T. McGrath, and G.W. Smith, Proceedings of the 6th Symposium of the National History of the Bahamas, 1994, p. 75-80.9014The Diversity of Marine Bacteria on the Surface of Macro Algae in the Danish Waters, J. E. Johansen and C. Sjoholm, International Symposium on the Exploration of Microbial Diversity, June, 1995.9013A Strategy for Rapid Identification of Gram-Negative Marine-Derived Bacteria, Y. Sun, N. Wainwright, and T. Holt, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 479.9012Computer-Assisted Identification of Marine Bacteria, K.T. Doan, and J. Sidie, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 353.9011Biochemical Diversity in a San Francisco Bay Solar Salt Facility, C.D. Litchfield, and V. Chandhoke, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 339.9010Transfer in Marine Sediments of the Naturally Occurring Plasmid pRAS1 Encoding Multiple Antibiotic Resistance, R. Sandaa, O. Enger, Applied and Environmental Microbiology, 1994, v.60, p. 4234-4238.9009Numerical Taxonomy of Gram-Negative, Oxidase-Positive Rods from Carcharhinid Sharks, D.J. Grimes, D. Jacobs, D.G. Swartz, P.R. Brayton, and R.R. Colwell, International Journal of Systematic Bacteriology, 1993, v.43, p. 88-98.9008Characterization of the Ureolytic Flora in the Spiral Valve of a Carcharhinid Shark, C.M. Preston and I.T. Knight, Abstracts of the 93rd Meeting of the American Society for Microbiology, 1993, p. 257.9007Evaluation of the BIOLOG Substrate Metabolism System for Classification of Marine Bacteria, H.J. Ruger and H.J. Krambeck, Systematic and Applied Microbiology 1994, v.17, p. 281-288.9006Bacteriological Flora of the Brine Shrimp (Artemia francisana) from a Hypersaline Pond in San Francisco Bay, California, D.V. Straub and B.A. Dixon, Aquaculture, 1993, v.118, p. 309-313.9005Characterization of Agarolytic Microscilla Isolates and their Extracellular Agarases, T. Naganuma, D. Coury, M. Polne-Fuller, A. Giba, and K. Horikoshi, Systematic and Applied Microbiology, 1993, v.16, p. 183-190.9004Extremely Halotolerant Halomonas sp. Isolated from a Tar Ball and its Cellular Fatty Acid Composition, T. Naganuma and K. Horikoshi, Journal of Marine Biotechnology, 1993, v.1, p. 151-157.9003Identification and Taxonomy of Marine Bacteria Using the Biolog System, B.R. Bochner, Abstracts of the International Marine Biotechnology Conference, October, 1991, p.86.9002Seasonal Changes in Seagrass Bacterial Rhizoplane Populations Using Carbon Source Utilization Patterns, G.W. Smith, J.R. Yates, and L.C. Ducate, Abstracts of the International Marine Biotechnology Conference, October, 1991, p.88.9001Carbon Source Utilization by Seagrass Rhizoplane Bacteria, G.W. Smith and D.T. Gerace, Programa Resumentes Second Congress on Marine Sciences, 1990, p.182. - Yeast and FungiBibliography of Publications on Biolog Applications
Updated April 2006 Section 10
Yeast and Fungi10023Global Carbon Utilization Profiles of Wild-Type, Mutant, and Transformant Strains of Hypocrea jecorina, I.S. Druzhinina, M. Schmoll, B. Seiboth, and C.P. Kubicek, Applied and Environmental Microbiology, 2006, v.72, pp. 2126-2133.10022Yeast as a Drug Discovery Platform in Huntington's and Parkinson's Diseases, T. Fleming Outeiro and Flaviano Giorgini, Biotechnology Journal, 2006, v.1, pp. 1-12.10021Effects of Artificial Defoliation of Pines on the Structure and Physiology of the Soil Fungal Community of a Mixed Pine-Spruce Forest, K. Cullings, C. Raleigh, M.H New, and J. Henson, Applied and Environmental Microbiology, 2005, v.71, pp. 1996-2000.10020Differences in Native Soil Ecology Associated with Invasion of the Exotic Annual Chenopod, Halogeton glomeratus , C. Woods, Biology and Fertility of Soils, 2003 v.38, pp. 72-77.10019Phenotype Analysis May Rival PCR in Lab’s Future, C. Woods, Indoor Environment Connections, 2004 v.5, pp. 1-3.10018Genetic and Metabolic Diversity of Trichoderma: A Case Study on South-East Asian Isolates, C.P. Kubicek, J. Bissett, I. Druzhinina, C. Kullnig-Gradinger, and G. Szakacs, Fungal Genetics and Biology, 2003, v.38, pp. 310-319.10017The Soil FungiLog Procedure: Method and Analytical Approaches toward Understanding Fungal Functional Diversity, E.A. Sobek and J.C. Zak, Mycologia, 2003, v.95, pp. 590-602.10016New Species of Trichoderma from Asia, J. Bissett, G. Szakacs, C. Nolan, I. Druzhinina, C. Gradinger, and C.P. Kubicek, Canadian Journal of Botany, 2003, v.81 pp. 570-586.10015Genetic and Metabolic Diversity of Trichoderma: A Case Study on South-East Asian Isolates, C.P. Kubicke, J. Bissett, I. Druzhinina, C. Kullnig-Gradinger, and G. Szakacs, Fungal Genet. Biol., 2003, v.38, pp. 310-319.10014Improved Identification of Yeasts and Moulds, International Food Hygiene, 2001, v.12, pp. 12-13.10013Utilization of Prebiotic Carbohydrates by Yeasts of Therapeutic Relevance, G. Mitterdorfer, W. Kneifel, and H. Viernstein, Letters in Applied Microbiology, 2001, v.33, pp. 251-255.10012A Microtiter Plate Procedure for Evaluating Fungal Functional Diversity, J.K. Dobranic and J.C. Zak, Mycologia, 91 (5), 1999, pp. 756-76510011Evaluation of the Biolog System for the Identification of Food and Beverage Yeasts, W. Praphailong, M. Van Gestel, G.H. Fleet and G.M. Heard, Applied Microbiology, 1997, v.24, pp. 455-459.10010The Influence of Genotype and Environment on the Physiological and Metabolic Diversity of Fusarium compactum, N.J. Talbot, P. Vincent, and H.G. Wildman, Fungal Genetics and Biology, 1996, v.20, pp. 254-267.10009Influence of Habitat on the Physiological and Metabolic Diversity of Fungi, H.G. Wildman, Canadian Journal of Botany, 1995, v.73, pp. S907-S916.10007Characterization of Penicillium by the Use of BIOLOG, H. Kiil and M. Sasa, Proceedings of the 3rd International Workshop on Penicillium and Aspergillus, Baarn, Netherlands, May, 1997.10006Substrate Utilization Patterns as Identification Aids in Penicillium, K.A. Seifert, J. Bissett, S. Giuseppin and G. Louis-Seize, Proceedings of the 3rd International Workshop on Penicillium and Aspergillus, Baarn, Netherlands, May, 1997.10005Substrate Utilization and Induction of Sporulation in Atkinsonella hypoxylon, M.S. Bergen, P.V. Reddy, and J.F. White, Jr., Abstracts of the Mycological Society of America Annual Meeting, Montreal, August, 1997.10004Modifications to the BiologTM Recommended Protocol for Fungal Identification, P.M. Jacoby-Garrett and L. Stetzenbach, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.461.10003Use of BiologTM System for Fungal Identification, P.M. Jacoby-Garrett and L. Stetzenbach, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p.461.10002Evaluation of the Biolog System for the Identification of Medically Important Yeast, M. Romagnoli, J. Osterhout, and W.G. Merz, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 107.10001AAFC Joins the Green Mould Project, J. Bissett, Mushroom World, Sept.,1995, v.3, p. 9-13. - Anaerobic MicrobiologyBibliography of Publications on Biolog Applications
Updated April 2006 Section 11
Anaerobic Microbiology10110Global Physiological Analysis of Carbon- and Energy-Limited Growing Escherichia coli Confirms a High Degree of Catabolic Flexibility and Preparedness for Mixed Substrate Utilization, J. Ihssen and T. Egli, Environmental Microbiology, 2005, v.7, pp. 1568-1581.10109Porphyromonas uenonis sp. nov., a Pathogen for Humans Distinct from P. asaccharolytica and P. endodontalis, S.M. Finegold, M-L. Vaisanen, M. Rautio, E. Eerola, P. Summanen, D. Molitoris, Y. Song, C. Liu, and H. Jousimies-Somer, Journal of Clinical Microbiology, 2004, v.42, pp. 5298-5301.10108H2 Production and Carbon Utilization by Thermotoga neapolitana Under Anaerobic and Microaerobic Growth Conditions, S.A. Van Ooteghem, A. Jones, D. van der Lelie, B. Dong, and D. Mahajan, Biotechnology Letters, 2004, v.26, pp. 1223-1232.10107Screening of Biofidobacterium Strains Isolated from Human Faeces for Antagonistic Activities Against Potentially Bacterial Pathogens, L. Bevilacqua, M. Ovidi, E. Di Mattia, L.D. Trovatelli and F. Canganella, Microbiological Research, 2003, v.158, pp. 179-185.10106Development of an Identification Panel for Anaerobic Bacteria Utilizing Carbon Oxidation, J. L. Argyle, P. Gadzinski, and B. R. Bochner, SIM News, 2000, v.50, pp. 113-118.10105Energy Sources of Non-starter Lactic Acid Bacteria Isolated from Cheddar Cheese, A.G. Williams, S.E. Withers, and J.M. Banks, International Dairy Journal, 2000, v.10, pp. 17-23.10104Amino Acid Fermentation in Non-starter Lactobacillus spp. Isolated from Cheddar Cheese, J.D. Tammam, A.G. Williams, J. Noble, and D. Lloyd, The Society for Applied Microbiology, 2000, v.30, pp. 370-37.10103Metabolic Reactions of Bifidobacteria and Separation from Lactic Acid Bacteria using Biolog AN MicroPlates, J. L. Argyle, and B. R. Bochner, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, I-10.10102Use of Biolog™ MicroPlates for Identification and Metabolic Studies of Anaerobic Bacteria, J.L. Argyle and B.R. Bochner, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p. 157.10101Use of Biolog™ MicroPlates for Identification and Metabolic Studies of Anaerobic Bacteria, J.L. Argyle and B.R. Bochner, Abstract from the Congress on Anaerobic Bacteria and Anaerobic Infections, 1996, 44PP. - Rainbow® AgarBibliography of Publications on Biolog Applications
Updated April 2006 Section 12
Rainbow® Agar10229New Developments in Chromogenic and Fluorogenic Culture Media, M. Manafi, International Journal of Food Microbiology, 2000, v.60, pp. 205-218.10228Comparative Evaluation of Different Chromogenic/Fluorogenic Media for Detecting Escherichia coli O157:H7 in Food, M. Manafi and B. Kremsmaier, International Journal of Food Microbiology, 2001, v.71, pp. 257-262.10226Isolation and Characterization of Enterohemorrhagic Escherichia coli, R. Reissbrodt, Remedia – Klinicka mikrobiologie, 1998, v.2, pp. 344-351.10225Charakterisierung Chromogener Nährmedien zum Nachweis von E. coli O157:H7/H”,Von R. Reissbrodt, U. Sachse, H. Steinrück, und H. Tschäpe, Bundesgesundheitsblatt Sonderdruck, Sounderheft, 41. Jahrgang Oktober 1998, pp. 36-3910224The Optimization of Isolation Media Used in Immunomagnetic Separation Methods for the Detection of Escherichia coli O157 in foods, I.D. Ogden, N.F. Hepburn, and M. MacRae, Journal of Applied Microbiology, 2001, v.91, pp. 373-379.10223A Multiplex Polymerase Chain Reaction Assay for Rapid Detection and Identification of Escherichia coli O157:H7 in Foods and Bovine Feces, P. M. Fratamico, L. K. Bagi, and T. Pepe, Journal of Food Protection, Vol. 63, No. 8, 2000, pp. 1032-1037, P. M. Fratamico, L. K. Bagi, and T. Pepe, Journal of Food Protection, 2000, v.63, pp. 1032-1037.10222Comparison of Sorbitol MacConkey Agar and a Two-Step Method Which Utilizes Enzyme-Linked Immunosorbent Assay Toxin Testing and a Chromogenic Agar to Detect and Isolate Enterohemorrhagic Escherichia coli, T.J. Novicki, J.A. Daly, S.L. Mottice, and K.C. Carroll, Journal of Clinical Microbiology, 2000, v.38, pp. 547-551.10221Methods for the Detection and Isolation of Shiga Toxin-producing Escherichia coli, E. De Boer and A.E. Heuvelink, The Society for Applied Microbiology, Journal of Applied Microbiology Symposium Supplement, 2000, v.88, pp. 133S-143S.10218Comparison of Selective Agar Media and Enrichment Broths for Recovering Heat-Stressed Escherichia Coli O157:H7 from Ground Beef, P. J. Taormina, M.R.S. Clavero & L. R. Beuchat, Reprinted from The Institute of Food Technologists Annual Meeting, June 1998, #17-3.10217Studies of Escherichia coli Cultured on RainbowTM Agar 0157 with Particular Reference to Enterohaemorrhagic Escherichia coli (EHEC), K.A. Betttelheim, Microbiol. Immunol., 1998, v.42, pp. 265-269.10216Comparison of Hektoen Enteric, XLT4, and Rainbow® Salmonella Agars, K. O. Stein and B. R. Bochner, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, P-69.10215Tellurite and Novobiocin Improve Recovery of E. coli O157:H7 on Rainbow® Agar O157, K. O. Stein and B. R. Bochner, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, P-80.10214Escherichia coli O157:H7 Shedding from Experimentally Inoculated Calves, J. Minter, S. C. Richardson, F. J. DeGraves, J. C. Wright, T. Penfound, J. W. Foster, and S. B. Price, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, B-16910213Clinical Evaluation of a Two-Step Approach, Using Meridian Diagnostics Premier EHEC ELISA and Biolog Rainbow® Agar O157, for the Isolation of Fecal O157 and non-0157 Enterohemorrhagic Escherichia Coli, T. J. Novicki, J. A. Daly, S. Mottice, K. C. Carroll, Abstracts of the 98th Meeting of the American Society for Microbiology, 1998, C-25710211Comparison of SELeCT™ and MPN Methodologies for the Recovery and Quantification of E. coli O157:H7 in Spiked Ground Beef Samples, David T. Ingram, Christos G. Rigakos, David Rollins, Edward T. Mallinson, Lewis Carr, Chinta Lamichhane, Sam W. Joseph, Abstracts from Southern Poultry Science Society (SPSS) Conference, Atlanta, Georgia, January 17-18, 1997.10210Potential Hazard of Radish Sprouts as a Vehicle of Escherichia coli O157:H7, Y. Hara-Kudo, H. Konuma, M. Iwaki, F. Kasuga, Y. Sugita-Konishi, Y. Ito and S. Kumagai, Journal of Food Protection, 1997, v.60, pp. 1125-1127.10209Use of CHROMagar O157 and Rainbow Agar O157 to Isolate Shiga-Like Toxin-Producing Echerichia coli O157:H7 from Samples of Meat and Faecal Specimen, C.S.O. Ng, N. Ryan, M. Yates, and K.A. Bettelheim, VTEC Conference, Baltimore, June, 1997.10208Advances in Pathogenic Detection, P.C. Vasavada, Food Testing & Analysis, April & May, 1997, p. 18-23, 47-48.10207Development and Evaluation of a 24Hr Method (Ecoli SELeCTTM ) for the Detection, Isolation, and Quantification of Escherichia coli O-157:H7 in Raw Ground Meat and Poultry, D.T. Ingram, C.G. Rigakos, D. Rollins, E.T. Mallinson, L. Carr, C. Lamichhane, and S. Joseph, Abstracts of the VTEC Conference, Baltimore, June, 1997.10206Adaptation of a Procedure Used to Isolate Escherichia coli O157:H7 from Ground Beef for Use with Implicated Liquid Vehicles, B.D. Saunders and J.A. Kiehlbauch, Abstracts of the 97th General Meeting of the American Society for Microbiology, 1997, p. 453.10205Development of a 24hr Assay (E. coli SELeCTTM) for the Isolation, Quantification and Confirmation of E. Coli O157:H7 in Poultry and Red Meat, D. T. Ingram, C. G. Rigakos, D. Rollins, E. T. Mallinson, L. Carr, and S. W. Joseph, Poster presented at the 96th General Meeting of the American Society for Microbiology, 1996.10204Comparison of a New Medium for Assessment of Urinary Tract Infection, B. Bell, Abstracts of the Australian Society for Microbiology, Microbiology Australia, September, 1995, v.16:4, PO1.35.10203Rainbow Agar VTEC: A New Chromogenic Culture Medium For Detecting Verotoxin-Producing E. coli, B.R. Bochner, Abstracts of the Australian Society For Microbiology, Microbiology Australia, September, 1995,v.16:4, PO2.1.10202Rainbow UTI System: A Rapid and Simple Multicolor Diagnostic System for Common Urinary Tract Pathogens, B. Bochner, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 65.10201Evaluation of Rainbow UTI System for Rapid Isolation and Identification of Urinary Pathogens, B.C. Schieven, Abstracts of the 95th General Meeting of the American Society for Microbiology, 1995, p. 65. -
Phenotype MicroArrays for Microbial CellsBibliography of Publications on Biolog Applications
Updated April 2006 Section 13
Phenotype MicroArrays13200Global Phenotypic Characterization of Bacteria, B.R. Bochner, FEMS Microbiol. Rev., 2009, v. 33, pp.191-205.13199Host Cell-free Growth of the Q Fever Bacterium Coxiella burnetii, A. Omsland, D.C. Cockrell, D. Howe, E.R. Fischer, K. Virtaneva, D.E. Sturdevant, S.F. Porcella, R.A. Heinzen, Proceedings of the National Academy of Sciences, 2009, Epub Feb. 25.13198Legionella pneumophila Couples Fatty Acid Flux to Microbial Differention And Virulence, R.L. Edwards, Z.D. Dalebroux, M.S. Swanson, Mol. Microbiol., 2009, v. 71, pp. 1190-1204.13197SpoT Governs Legionella pneumophila Differentiation in Host Macrophages, Z.D. Dalebroux, R.L. Edwards, M.S. Swanson, Mol. Microbiol., 2009, v.71, pp. 640-658.13196Involvement of the oscA Gene in the Sulphur Starvation Response and in Cr(VI) Resistance in Pseudomonas corrugata 28, C. Viti, F. Decorosi, A. Mini, E. Tatti, L. Giovannetti, Microbiology, 2009, v. 155, pp. 95-105.13195Overcoming the Anaerobic Hurdle in Phenotypic Microarrays: Generation and Visualization of Growth Curve Data for Desulfovibrio vulgaris Hildenborough, S. Borglin, D. Joyner, J. Jacobsen, A. Mukhopadhyay, T. C. Hazen, J. Microbiol. Methods, 2008. v. 76 pp. 159-168.13194Characterization of the myo-Inositol Utilization Island of Salmonella enterica serovar Typhimurium, C. Kroger, T.M. Fuchs, J. Bacteriol. 2009, v. 191, pp. 545-554.13193Phenotypic Diversity among Cronobacter spp., B. Tall, 1st International Meeting on Cronobacter, 2009, Dublin, Ireland.13192What is (and isn't) Cronobacter, C. Iversen, 1st International Meeting on Cronobacter, 2009, Dublin, Ireland.13191Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology, J. Puchalka, M. A. Oberhardt, M. Godinho, A. Bielecka, D. Regenhardt, K. N. Timmis, J. A. Papin, V. A. P. Martins dos Santos, PLoS Computational Biology, 2008, v. 4.pp. 1-18.13190High Throughput Phenotypic Characterization of Pseudomonas aeruginosa Membrane Transport Genes, D.A. Johnson, S.G. Tetu, K. Phillippy, J. Chen, Q. Ren & I.T. Paulsen, PLoS Genet., 2008, v. 4, pp. 1-11.13189RamA Confers Multidrug Resistance in Salmonella enterica via Increased Expression of acrB, which is Inhibited by Chlorpromazine, A.M. Bailey, I.T. Paulsen, L.J. Piddock, Antimicrob Agents, 2008 v. 52, pp. 3604-3611.13188Phenotype Profiling of Single Gene Deletion Mutants of E. coli Using Biolog Technology, Y. Tohsato, H. Mori, Proceeding of the 19th International Conference on Genome Informatics (GIW 2008), Gold Coast, Australia, pp. 1-11.13187The Applications of Systematic In-Frame, Single-Gene Knockout Mutant Collection of Escherichia coli K-12, T. Baba, HC Huan, K. Datsenko, BL Wanner, H. Mori, Methods Mol. Biol., 2008, v. 416, pp. 183-194.13178Identification and Characterization of Brewers Yeast Using Phenotype MicroArrays, S. Walker, Abstract, Veterinary Laboratories Agency Conference, November 2008.13177Development of Phenotype MicroArrays for The Characterisation of a Porcine Cell Line, M. Abu Oun, Abstract, Veterinary Laboratories Agency Conference, November 2008.13176The Gut Microbiota as a Virtual Organ And Novel Approaches to Understand it, J. Marchesi, Abstract, Veterinary Laboratories Agency Conference, November 2008.1317513174Use of Biolog for Studying Oral Communities, J. Greenman, Abstract, Veterinary Laboratories Agency Conference, November 2008.13173Integrating PM Technology With In Situ and In Silico Analyses of Microbial Activities, G. Preston, Abstract, Veterinary Laboratories Agency Conference, November 2008.13172Metabolomics of Slow-Growing Mycobacterium tuberculosis and Mycobacterium bovis Strains Using Phenotype MicroArray Technology, B. Upadhyay, Abstract, Veterinary Laboratories Agency Conference, November 2008.13171Using Phenotypic Data to Construct and Curate Genome-scale Models, P.Suthers, Abstract, Veterinary Laboratories Agency Conference, November 2008.13170The Detection of Differences in the Utilisation of Glyoxylate and 2-Carbon Compounds in Salmonella typhimurium, M. Saunders, Abstract, Veterinary Laboratories Agency Conference, November 2008.13169Fitness Costs and Stability of a High-level Ciprofloxacin Resistance Phenotype in Salmonella enteritidis, S. Fanning, Abstract, Veterinary Laboratories Agency Conference, November 2008.13168Phenotypic and Genotypic Differences Between Pathogenic and Laboratory Escherichia coliStrains, J. Hobman, Abstract, Veterinary Laboratories Agency Conference, November 2008.13167Identification of an ABC-Type Trehalose Transporter in Mycobacterium smegmatis, S. Jaques III, L. Daniels, poster, SC-ASM Conference, Nov. 2008, Austin.13166Carbon Source Utilization Pattern Among Rapidly Growing Mycobacterium (RGM) Species by Phenotypic Array Analysis Using Biolog OmniLog System, M. Rahman, S. Jaques III, L. Daniels, poster, SC-ASM Conference, Nov. 2008, Austin13165Development of a New Test Panel for Identification of Both Gram-Negative and Gram-Positive Bacteria, A. Franco-Buff, V. Gomez, E. Olender, G. Gadzinski, B. Bochner, poster, ECCMID, April, 2008, Barcelona13164Phenotype MicroArray Analysis of The Metabolism of Helicobacter pylori, X-H Lei, B. Bochner, poster, Spring Meeting, Society for General Microbiology, March, 2008, Edinburgh13163Important Discoveries from Analysing Bacterial Phenotypes, B. R. Bochner, L. Giovannetti, C. Viti, Mol. Microbiol., 2008, v. 70, pp. 274-280.13162Florence Conference on Phenotype MicroArray Analysis of Microorganisms – The Environment, Agriculture, and Human Health, C. Viti, B. Bochner, L. Giovannetti, 2008, Annals of Microbiology, v. 2, pp. 347-349.13161Phenotypes of Salmonella enterica Serovar Typhi and Acinetobacter Spp., Reflections of Different Lifestyles?, L. Dijkshoorn, J.T. Van Dissel, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13160Longitudinal Study of Pseudomonas aeruginosa Isolates from Cystic Fibrosis Lungs, L. Yang, S.K. Hansen, L. Jelsbak, H. Jarmer , J.A.J. Haagensen, H.K. Johansen, N. Hřiby, S. Molin, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13159Functional Diversity and Productivity Peak at Intermediate Dispersal Rate in Evolving Bacterial Metacommunities, P. Venail, R.C. Maclean, T. Bouvier, M.A. Brockhurst, M.E. Hochberg, N. Mouquet, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13158Adapting Biolog Phenotype MicroArray Technology to Reveal the Metabolomics of Mycobacterium tubercolosis and Mycobacterium bovis, Slow-growing Pathogens with d=0.03 to 0.05/h., B. Upadhyay, M.D. Fielder, P.R. Wheeler, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13157Phenotypic Microarray analysis of Cronobacter Spp. (Formerly Enterobacter sakazakii), B.D. Tall, S. Fanning, C. Iversen, N. Mullane, M. H. Kothary, A. Datta, L. Carter, S. K. Curtis, B.A. McCardell, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13156Transcriptional Response of Desulfovibrio vulgaris Hildenborough to Oxygenation: An Indirect Metabolic Analysis by Restriction Fragment Functional Display (RFFD), M. Santana, J. González, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13155Influence of Pseudomonas aeruginosa on Biofilm Formation and Internalization of Burkholderia cenocepacia Strains, L. Pirone, C. Auriche, C. Dalmastri, F. Ascenzioni,, A. Bevivino , Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13154The Metabolic Fingerprint of Filamentous Fungi Responsible for Damage and Biodegradation in Cultural Heritage: Applications and Perspectives, F.P. Pinzari, V. C. Cialei, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13153Phenotypic Characterization of Thermophilic Bacilli Isolated from the Sites with Geothermal and Geo-chemical Anomalies of Armenia, H. Panosyan, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13152Regulatory Network of AcrAB Multidrug Efflux Pump in Salmonella and its Role in Response to Metabolites, E. Nikaido, K. Nishino, A. Yamaguchi, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13151Roles of Multidrug Efflux Pumps in Antimicrobial Peptide Resistance of Salmonella enterica, T. Nakano, K. Nishino, A. Yamaguchi, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13150Phenotypic Analysis of Multidrug Efflux Pumps - Not Just for Multidrug Resistance, K. Nishino, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13149Assessment of Phenotypic Features of Bacteria Isolated from Different Antarctic Environments, S. Mangano, C. Caruso, L. Michaud, A. Lo Giudice, V. Bruni, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13148Genotypic and Phenotypic Diversity of Streptococcus thermophilus Strains Isolated from the Caucasian Yogurt-like Product Matsoni, I. Malkhazova, M. Merabishvili, N. Chanishvili, L. Brusetti, D. Daffonchio, D. Mora, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13147Differentiation of Novel Species Using the Phenotype MicroArray, C. Iversen, N. Mullane, S. Fanning, B. Mccardell, B.D. Tall, M.H. Kothary, L. Carter, A. Lehner, R. Stephan, H. Joosten, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13146Phenotypic Analysis of Enterobacter sakazakii (Cronobacter spp.), C. Iversen, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13145Use of a Phenotype Array to Study an Adaptive Response in Enterobacter sakazakii, B. Arku, S. Fanning, T. Quinn, K. Jordan, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13144Phenotype MicroArray Analysis of Anaerobes, T. C. Hazen, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13143A Phenotypic Approach to Differentiate Strains within Oenococcus oeni species, S. Guerrini, S. Mangani, L. Granchi, M. Vincenzini, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13142H-NS, A Master Controller of Warm Adaptation in Escherichia coli: A Transcriptomic Analysis, F. Fabretti, T. Carzaniga, F. Falciani, G. Dehň, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13141Novel Cues of L. pneumophila Differentiation Uncovered by Phenotype MicroArrays, R.L. Edwards, Z.D. Dalebroux, M. S. Swanson, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13140Comparative Phenotypic Microarray Analysis of Listeria monocytogenes Strains Involved in Invasive and Gastroenteritis Listeriosis Outbreaks, A. Datta, L.Carter, L. Burall, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13139Carbon and Energy Metabolism of Escherichia coli in the Intestine, T. Conway, P.S. Cohen, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13138Biolog Microbial Identification System-study on the Operating Regulation of Bacteria Identification, C. Chi, Y. Mei, L. Jin-Xia, Y. Su, H. Hai-Rong, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13137Identification of Saccharomyces cerevisiae by the Biolog automated microbes identification system, C. Chi, L. Jin-Xia, Y. Su, H. Hai-Rong, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13136Extended-spectrum Beta-lactamase Producing Strains of Escherichia coli Isolates: Phenotypic and Genotypic Characterization, E.C. Adibe, C.E. Ilodigwe, H.I. Ekenedo, L.C. Ofora, S.I. Okonkwo, S.A. Obi, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13135Characterization of a Porcine Cell Line by Phenotype MicroArray, M. Abuoun, J.W. Collins, M.J. Woodward, R.M. La Ragione, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13134Integrating Biolog Phenomic Analysis with Genomic Approaches to Explore the Diversity of Natural Sinorhizobium meliloti Strains, E. Biondi , Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13133Phenotypic Analysis of Cr(VI)-sensitive Mutants of Pseudomonas corrugata Strain 28, E. Tatti, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13132Physiological Characterization of Pseudomonas pseudoalcaligenes KF707: Biofilm Development and Adaptation to Environmental Stress, S. Fedi, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13131Antimicrobials inducing E. coli Biofilm Formation, Identified by Phenotype MicroArrays, A. Boehm, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13130Linking Phenotype to Genotype of Epidemiologically Prevalent Salmonella by Comparative Microarray Analysis, J. Guard-Bouldin, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13129Phenotypic Analysis of Salmonella, M. Anjum, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13128Use of PM Technology to Characterize Nutrient Utilization and Restriction in the Obligate Intracellular Bacterial Pathogen Coxiella burnetii, A. Omsland, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13127Characterization of Porcine Cell Using Phenotype MicroArray, M. Abuoun, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13126PM Assay of Mammalian Cells, B. Bochner, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13125Phenotype MicroArrays as a Tool to Study Physiology of Industrially Important Fungi, I. Druzhinina, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13124Pleiotropic Effects of Mutations of the LEU4 Gene in Saccharomyces cerevisiae, E. Casalone, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13123Unravelling Membrane Transport Mechanisms in Pseudomonas sp. through Phenomics, I. Paulsen, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13122Towards Elucidation of Physiological Networks in a Cell Using PM Technology and Genetic Network Analysis, H. Mori, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13121Use of Growth Profiling Data to Improve Constraint-based Modelling of Metabolism, L. Yang, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 200813120Phenotype MicroArray Technology: Principles and Practice, B. Bochner, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13119Phenotypic Analysis of Food-borne Pathogens, T. Cebula, Abstract, Florence Conference on Phenotype MicroArray Analysis of Microorganisms, March, 2008.13118Visualization of Growth Curve Data from Phenotype Microarray Experiments,, J.S. Jacobsen, D.C. Joyner, S.E. Borglin, T.C. Hazen, A.P. Arkin, E.W. Bethel, 11th International Conference on Information Visualization (IV07), Zurich, Switzerland, July 4-6, 2007, Published by the IEEE Computer Society.13117Response of Desulfovibrio vulgaris to alkaline stress, S. Stolyar, Q. He, M.P. Joachimiak, Z. He, Z.K. Yang, S.E. Borglin, D.C. Joyner, K. Huang, E. Alm, T.C. Hazen, J. Zhou, J.D. Wall, A.P. Arkin, D.A. Stahl, 2007, J. Bacteriol., v.189, pp. 8944-8952.13116Analysis of a ferric uptake regulator (Fur) mutant of Desulfovibrio vulgaris Hildenborough, K.S. Bender, H-C Yen, C.L. Hemme, Z. Yang, Z. He, Q. He, J. Zhou, K.H. Huang, E.J. Alm, T.C. Hazen, A.P. Arkin, J.D. Wall, 2007, Appl. Environ. Microbiol., v.73, pp. 5389-5400.13115Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe (III)-NTA, Y.J. Tang, R. Chakraborty, H. García Martín, J. Chu, T.C. Hazen, J.D. Keasling, 2007, Appl. Environ. Microbiol., v.73, pp. 3859-3864.13114Cell wide response to low oxygen exposure in Desulfovibrio vulgaris Hildenborough, A. Mukhopadhyay, A.M. Redding, M.P. Joachimiak, A.P. Arkin, S.E. Borglin, P.S. Dehal, R. Chakraborty, J.T. Geller, T.C. Hazen, D.C. Joyner, V.J.J. Martin, J.D. Wall, Z.K. Yank, J. Zhou, J.D. Keasling, J. Bacteriol., v.189, pp. 5996-6010.13113Pathway confirmation and flux analysis using 13C isotopic labeling of metabolites in Desulfovibrio vulgaris Hildenborough via FT-ICR Mass Spectrometry, Y. Tang, F. Pingitore, A. Mukhopadhyay, R. Phan, T.C. Hazen, J.D. Keasling, 2007, J. Bacteriol., v.189, pp. 940-949.13112Study of Nitrate Stress in Desulfovibrio vulgaris Hildenborough Using iTRAQ Proteomics, A.M. Redding, A. Mukhopadhyay, D. Joyner, T.C. Hazen, J.D. Keasling, 2006, Briefings in Functional Genomics and Proteomics, v.5, pp. 133-143.13111Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough inferred from global transcriptional analysis, Q. He, K.H. Huang, Z. He, E.J. Alm, M.W. Fields, T.C. Hazen, A.P. Arkin, J.D. Wall, J. Zhou, 2006, Appl. Environ. Microbiol, v.72, pp. 4370-4381.13110Salt stress in Desulfovibrio vulgaris Hildenborough: An integrated genomics approach, A. Mukhopadhyay, Z. He, E.J. Alm, A.P. Arkin, E.E. Baidoo, S.C. Borglin, W. Chen, T.C. Hazen, Q. He, H.-Y. Holman, K. Huang, R. Huang, D.C. Joyner, N. Katz, M. Keller, P. Oeller, A. Redding, J. Sun, Z. Yang, J.D. Wall, J. Wei, H.-C. Yen, J. Zhou, J.D. Keasling, J. Bacteriol, v.188, pp. 4068-4078.13109The global ppGpp-mediated stringent response to amino acid starvation in Escherichia coli, M.F. Traxler, S.M. Summers, H-T Nguyen, V. M. Zacharia, G.A. Hightower, J.T. Smith, T. Conway, Molecular Microbiology, v.68, pp. 1128-1148.13108Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa, M.A. Oberhardt, J. Puchalka, K.E. Fryer, V.A. Martins dos Santos, J.A. Papin, Bacteriol., v.190, pp. 2790-2803.13107Comparison of carbon nutrition for pathogenic and commensal Escherichia coli strains in the mouse intestine, A.J. Fabich, S.A. Jones, F.Z. Chowdhury, et al., Infect. Immun., v.76, pp. 1143-1152.13106Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities, P.A. Venail, R.C. MacLean, T. Bouvier, M.A. Brockhurst, M.E. Hochberg, N. Mouquet, Nature, v.452, pp. 210-214.13105Photostimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress, M.A. Friedl, M. Schmoll, C.P. Kubicek, I.S. Druzhinina, Microbiology, 2008, v.154, pp. 1229-1241.13104Carbon source dependence and photostimulation of conidiation in Hypocrea atroviridis, M.A. Friedl, C.P. Kubicek, I.S. Druzhinina, Appl. Environ. Microbial., 2008, v.74, pp. 245-250.13103A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information., A.M. Feist, C.S. Henry, J.L. Reed, M. Krummenacker, A.R. Joyce, P.D. Karp, L.J. Broadbelt, V. Hatzimanikatis, B.O. Palsson, Mol. Syst. Biol., 2007, v.3, p. 121.13102Beta-D-Allose inhibits fruiting body formation and sporulation in Myxococcus xanthus, M. Chavira, N. Cao, K. Le, T. Riar, N. Moradshahi, M. McBride, R. Lux, W. Shi, J. Bacteriol., 2007, v.189, pp. 169-178.13101Application of DNA bar codes for screening of industrially important fungi: the haplotype of Trichoderma harzianum sensu stricto indicates superior chitinase formation., V. Nagy, V. Seidl, G. Szakacs, M. Komon-Zelazowska, C.P. Kubicek, I.S. Druzhinina, Appl. Environ. Microbiol., 2007, v.73, pp. 7048-7058.13100Exploring Genotypic and Phenotypic Diversity of Microbes Using Microarray Approaches, A. Mukherjee, S.A. Jackson, J.E. LeClerc, T.A. Cebula, Toxicology Mechanisms and Methods, 2006, v.16, pp. 121-128.13099Global carbon utilization profiles of wild-type, mutant, and transformant strains of Hypocrea jecorina, I.S. Druzhinina, M. Schmoll, B. Seiboth, C.P. Kubicek, Appl. Environ. Microbiol., 2006, v.72, pp. 2126-2133.13098Carbon source utilization by the marine Dendryphiella species D. arenaria and D. salina, T.E. dela Cruz, B.E. Schulz, C.P. Kubicek, I.S. Druzhinina, FEMS Microbial Ecol., 2006, v.58, pp. 343-353.13097H-NS controls metabolism and stress tolerance in Escherichia coli O157:H7 that influence mouse passage, I. Erol, K-C Jeong, D.J. Baumler, B. Vykhodets, S-H Choi, C.W. Kaspar , BMC Microbiology, 2006, v.6.13096A Screening system for carbon sources enhancing beta-N-acetylglucosaminidase formation in Hypocrea atroviridis (Trichoderma atroviride), V. Seidl, IS Druzhinina, C.P. Kubiceka, Microbiology, 2006, v.152, pp. 2003-2012.13095Altered Utilization of N-Acetyl-D-Galactosamine by Escherichia coli O157:H7 from the 2006 Spinach Outbreak, A. Mukherjee, M. K. Mammel, J. E. LeClerc, T. A. Cebula, Journal of Bacteriology, 2008, v.190, pp. 1710-1717.13094Uncovering New Metabolic Capabilities of Bacillus subtilis Using Phenotype Profiling of Rifampin-Resistant rpoB Mutants, A. E. Perkins, W. L. Nicholson, Journal of Bacteriology, 2008, v.190, pp. 807-814.13093Carbon Source Dependence and Photostimulation of Conidiation in Hypocrea atroviridis, M. A. Friedl, C. P. Kubicek, I. S. Druzhinina, Applied and Environmental Microbiology, 2008, v.74, pp. 245-250.13092Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1, M. A. Oberhardt, J. Puchalka, K. E. Fryer, V. A. P. Martins dos Santos, J. A. Papin, Journal of Bacteriology, v.190, pp. 2790-2803.13091Dual Involvement of CbrAB and NtrBC in the Regulation of Histidine Utlization in Pseudomonas fluorescens SBW25, X.-X. Zhang, P. B. Rainey, Genetics, 2008, v.190, pp. 185-195.13090A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information, A. M. Feist, C. S. Henry, J. L. Reed, M. Krummenacker, A. R. Joyce, P. D. Karp, L. J. Broadbelt, V. Hatzimanikatis, B. Paisson, Molecular Systems Biology 3, 2007.13089Regulatory Overlap and Functional Redundancy among Bacillus subtilis Extracytoplasmic Function s Factors, T. Mascher, A.-B. Hachmann, J. D. Helmann, Journal of Bacteriology, 2007, v.189, pp. 7500-7511.13088Pseudomonas syringae pv. tomato DC3000 Uses Constitutive and Apoplast-Induced Nutrient Assimilation Pathways to Catabolize Nutrients That Are Abundant in the Tomato Apoplast, A. Rico, G. M. Preston, MPMI, 2008, v.21, pp. 269-282.13087Genome-scale Reconstruction of Metabolic Network in Bacillus subtilis Based on High-throughput Phenotyping and Gene Essentiality Data, Y. K. Oh, B. O. Palsson, S. M. Park, C. H. Schilling, R. Mahadevan, J. Biol. Chem., v.282, pp. 28791-28799.13086Genomic and Phenotypic Diversity of Coastal Vibrio cholerae Strains Is Linked to Environmental Factors, D. P. Keymer, M. C. Miller, G. K. Schoolnik, A. B. Boehm, Applied and Environmental Microbiology, 2007, v.73, pp. 3705-3714.13085Metabolic capacity of Bacillus cereus strains ATCC 14579 and ATCC 10987 interlinked with comparative genomics, M. Mols, M. de Been, M. H. Zwietering, R. Moezelaar, T. Abee, Environmental Microbiology, 2007, pp. 2933-2944.13084Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25, J. Jones, D.J. Studholme, C.G. Knight, G.M. Preston, Environmental Microbiology, 2007, pp. 3046-3064.13083Genetic Analysis of a Novel Pathway for D-Xylose Metabolism in Caulobacter crescentus, C. Stephens, B. Christen, T. Fuchs, V. Sundaram, K. Watanabe, U. Jenal, Journal of Bacteriology, 2007, v.189, pp. 2181-2185.13082Visualization of Growth Curve Data from Phenotype Microarray Experiments, J. S. Jacobsen, D. C. Joyner, S. E. Borglin, T. C. Hazen, A. P. Arkin, E. W. Bethel, 11th International Conference Information Visualization (IV ’07), 2007.13081Contribution of Target Gene Mutations and Efflux to Decreased Susceptibility of Salmonella enterica Serovar Typhimurium to Fluoroquinolones and Other Antimicrobials, S. Chen, S. Cui, P. F. McDermott, S. Zhao, D. G. White, I. Paulsen, J. Meng, Antimicrobial Agents and Chemotherapy, 2007, v.51,pp. 535-542.13080Cryptococcus neoformans a Strains Preferentially Disseminate to the Central Nervous System during Coinfection, K. Nielsen, G. M. Cox, A. P. Litvintseva, E. Mylonakis, S. Malliaris, D. K. Benjamin, Jr., S. S. Giles, T. G. Mitchell, A. Casadevall, J. R. Perfect, J. Heitman, Infection and Immunity, 2005, v.73, pp. 4922-4933.13079Regulation of Carbon and Nitrogen Utilization by CbrAB and NtrBC Two-Component Systems in Pseudomonas aeruginosa, W. Li, C-D. Lu, Journal of Bacteriology, 2007, v.189, pp. 5413-5420.13078Diversity of soil mycobacterium isolates from three sites that degrade polycyclic aromatic hydrocarbons, C.D. Miller, R. Child, J.E. Hughes, M. Benscai, P.P. Der, R.C. Sims, A.J. Anderson, Journal for Applied Microbiology, v.102, pp. 1612-1624.13077Characterization of Chromate-Resistant and – Reducing Bacteria by Traditional Means and by a High-Throughput Phenomic Technique for Bioremediation Purposes, C. Viti, F. Decorosi, E. Tatti, L. Giovannetti, Biotechnol Prog., 2007, v.23, pp. 553-559.13076Growth Characteristics of Microorganisms on Commercially Available Animal-free Alternatives to Tryptic Soy Medium, D. Cleland, K. Jastrzembski, E. Stamenova, J. Benson, C. Catranis, D. Emerson, B. Beck, Journal of Microbiological Methods, 2007, v.69, pp.345-352.13075Escherichia coli enzyme IIANtr Regulates the K+ Transporter TrkA, C-R. Lee, S-H. Cho, M-J. Yoon,A. Peterkofsky, Y-J. Seok, 2007, The National Academy of Sciences of the USA, 2007.13074A Previously Undescribed Pathway for Pyrimidine Catabolism, K.D. Loh, P. Gyaneshwar, E.M. Papadimitriou, R. Fong, K-S. Kim, R. Parales, Z. Zhou, W. Inwood, and S. Kustu, Proceedings of the National Academy of Sciences, 2006, v.103, pp. 5114-5119.13073FhuA and HgbA, Outer Membrane Proteins of Actinobacillus pleuropneumoniae: Their Role as Virulence Determinants, L. Shakarji, L.G. Mikael, R. Srikumar, M. Kobisch, J.W. Coulton, and M. Jacques, Canadian Journal of Microbiology, 2006, v.52, pp. 391-396.13072Phenotype MicroArray Analysis of Yeast Strains, B. Bochner, Abstract from the International Wine Microbiology Symposium, 2006.13071Phenotype MicroArrays that Assay the Energy Producing Pathways Active in Cells, B. Bochner, Abstract from the IBC Conference on Metabolic Syndrome, 2006.13070Global Carbon Utilization Profiles of Wild-Type, Mutant, and Transformant Strains of Hypocrea jecorina, I.S. Druzhinina, M. Schmoll, B. Seiboth, and C.P. Kubicek, Applied and Environmental Microbiology, 2006, v.72, pp. 2126-2133.13069Yeast as a Drug Discovery Platform in Huntington's and Parkinson's Diseases, T.F. Outeiro and F. Giorgini, Biotechnology Journal, 2006, v.1, pp. 1-12.13068Cell Scenario a New Look at Microarrays, C. Potera, Environmental Health Perspectives, 2006, v.114, pp. A-172-A175.13067Biolog Advances Global Cell Analysis Scans, C. Potera, Genetic Engineering News, 2006, v.26, pp. 24-25.13066Development of Phenotype MicroArrays for Measuring Energy Producing Pathways in Mammalian Cells, L.A. Wiater, M. Siri, R. Huang, and B.R. Bochner, Poster presented at Cambridge Healthtech Institute's 13th International Molecular Medicine Tri-Conference, February 2006 and The Federation of American Societies for Experimental Biology, April 2006.13065Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis, C.A. Morales, S. Porwollik, J.G. Frye, H. Kinde, and M. McClelland, Applied and Environmental Microbiology, 2005, v.71, pp. 4388-4399.13064A selC-Associated Genomic Island of the Extraintestinal Avian Pathogenic Escherichia coli Strain BEN2908 is Involved in Carbohydrate Uptake and Virulence, I. Chouikha, P. Germon, A. Brée, P. Gilot, M. Moulin-Schouleur, and C. Schouler, Journal of Bacteriology, 2006, v.188, pp. 977-987.13063Phenotype Microarray Profiling of Staphylococcus aureus menD and hemB Mutants with the Small-Colony-Variant Phenotype, C. von Eiff, P. McNamara, K. Becker, D. Bates, X-H. Lei, M. Ziman, B.R. Bochner, G. Peters, and R.A. Proctor, Journal of Bacteriology, 2006, v.188, pp. 687-693.13062Discovering New Drugs on the Cellular Level, NASA Spinoff, 2005, pp. 12-13.13061Global Physiological Analysis of Carbon- and Energy- Limited Growing Escherichia coli Confirms a High Degree of Catabolic Flexibility and Preparedness for Mixed Substrate Utilization, J. Ihssen, and T. Egli, Environmental Microbiology, 2005, v.7, pp. 1568-1581.13060Role of HtrA in Surface Protein Expression and Biofilm Formation by Streptococcus mutants, S. Biswas and I. Biswas, Infection and Immunity, 2005, v.73, pp. 6923-6934.13059Requirements of the Dephospho-form of Enzyme IIANTR for Derepression of Escherichia coli K-12 ilvBN Expression, C-R. Lee, B-M. Koo, S-H. Cho, Y-J. Kim, M-J. Yoon, A. Peterkofsky, and Y-J. Seok, Molecular Microbiology, 2005, v.58, pp. 334-344.13058Harnessing Natural Diversity to Probe Metabolic Pathways, O.R. Homann, H. Cai, J.M. Becker, and S.L. Lindquist, PLOS Genetics, 2005, v. 1, pp. 0715-0729.13057The Phagosomal Transporter A Couples Threonine Acquisition to Differentiation and Replication of Legionella pneumophila in Macrophages, J-D. Sauer, M.A. Bachman, and M.S. Swanson, Proceedings of the National Academy of Sciences, 2005, v.102, pp. 9924-9929.13056A New Pathway for Pyrimidine Catabolism in E. coli K-12: The b1012-b1006 Operon, K.D. Loh, P. Gyaneshwar, E.M. Papadimitriou, R. Fong, K-S. Kim, Z. Zhou, W. Inwood, and S. Kutsu, Abstract from the International Union of Microbiological Societies, July 2005.13055Metabolic Analysis of Helicobacter pylori Strain 26695 with Phenotype MicroArray Technology, X-H. Lei, S. Tan, D. E. Berg, and B. R. Bochner, Poster B-760, Session #5-B, presented at International Union of Microbiological Societies, July 2005.13054Characterization of the Genetic Origins of Phenotypic Diversification of the Pathogenic Salmonellae, B. Bochner, C.A. Morales, S. Porwollik, J.G. Frye, R. Gast, X-H. Lei, M. Ziman, M. McClelland, and J. Guard-Bouldin, Poster B-800, Session # 6-B, presented at International Union of Microbiological Societies, July 2005.13053Phenotype MicroArray Profiling of Staphylococcus aureus menD and hemB Mutants with Small Colony Variant (SCV) Phenotype, C. von Eiff, P. McNamara, K. Becker, D. Bates, X-H. Lei, M. Ziman, B.R. Bochner, G. Peters, and R.A. Proctor, Poster B-873, Session # 138-B, presented at International Union of Microbiological Societies, July 2005.13052Use of Phenotype MicroArray Technology to Fingerprint E. coli Loss-of-Function Mutants, M. Ziman, D. Chan, J. Carlson, S. Suharnan, H. Mori, H. Gobara, K. Nakahigashi, T. Baba, S. Tamishima, H. Matsui, and M. Arita, Poster presented at the 7th Annual Frontier of Microbial Research Genome Workshop, March 2005.13051Proline-Based Modulation of 2,4-Diacetylphloroglucinol and Viable Cell Yields in Cultures of Pseudomonas fluorescens Wild-Type and Over-Producing Strains, P.J. Slininger and M.A. Shea-Andersh, Applied Microbiology and Biotechnology, 2005, v.68, pp. 630-638.13050Gene Array Analysis of Yersinia enterocolitica FlhD and FlhC: Regulation of Enzymes Affecting Synthesis and Degradation of Carbamoylphosphate, V. Kapatral, J.W. Campbell, S.A. Minnich, N.R. Thomson, P. Matsumura, and B.M. Pruess, Microbiology, 2004, v.150, pp. 2289-2300.13049Phenotypic MicroArray Provides a Biochemical Profile of Staphylococcus aureus menD and hemB Mutants with Small Colony Variant (SCV) Phenotype, C. von Eiff, P. McNamara, D. Bates, K. Becker, B. Bochner, G. Peters, R.A. Proctor, Poster presented at 11th International Symposium on Staphylococci & Staphylococcal Infections, October 2004.13048Phenotype MicroArray Analysis of a S. aureus mnhD (NuoN-like) Mutant, a Thrombin-Induced Platelet Microbicidal Protein (tPMP)-Resistant Strain, R.A. Proctor, P.J. McNamara, A. Franco-Buff, B.R. Bochner, J. Schrenzel, M. Yeaman, and A. Bayer, Poster presented at 11th International Symposium on Staphylococci & Staphylococcal Infections, October 2004.13047Identifying Antimicrobials Using Isobologram Arrays, L.A. Wiater, K. Kim, J.D. Carlson, and P. Gadzinski, Abstract from the 104th General Meeting of the American Society of Microbiology, May 2004.13046Phenotype MicroArray Analysis of Two-Component Regulatory Genes of Escherichia coli, X-H. Lei, L. Zhou, B.L. Wanner, and B. R. Bochner, Poster K-144, presented at 103rd General Meeting of the American Society of Microbiology, May 2003.13045Genomic and Physiological Characterization of Desulfovibrio vulgaris Strains Isolated from A Metal Contaminated Lake,S.M. Stolyar, C.B. Walker, H-C. Yen, B. Zuniga, N. Pinel, H. Gough, Z. He, Q. He, J. Zhou, T.C. Hazen, S.E. Borglin, J.D. Wall, and D.A. Stahl, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13044Phenotype MicroArray Analysis of Desulfovibrio vulgaris, S.E. Borglin, T.C. Hazen, J. Carlson, J. Wall, and D. Joyner, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13043High Throughput Analysis of Stress Growth Response in Shewanella oneidensis MR1, . Katz, T.C. Hazen, R. Huang, D. Joyner, and S.E. Borglin, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13042Linkage of 23S and rrlA Single Nucleotide Polymorphisms to Phenotype Heterogeneity of Salmonella Enteritidis, C.A. Morales and J. Guard-Bouldin, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13041Legionella pneumophilaRequire phtA for Threonine Acquisition, Differentiation and Replication in Murine Bone Marrow Derived Macrophages, J-D. Sauer and M. Swanson, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13040Phenotype MicroArray analysis of an Escherichia coli O157: H7 luxS Mutant, M. Walters, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13039Correlation of Phenotype with the Genotype of egg-contaminating Salmonella Enteritidis, C.A. Morales, S. Porwllik, J.G. Frye, H. Kinde, M. McClelland, and J. Guard-Bouldin, Abstract from the ASM 105th Annual Meeting.13038Only Rarely Does Inorganic Polyphosphate (poly P) Depletion Decrease Motility in Helicobacter pylori, S. Tan, C.D. Fraley, W.L. Beatty, Q. Gong, B.K. Dieckgraefe, A. Kornberg, and D.E. Berg, Abstract from the ASM 105th Annual Meeting, June 5th-June 9th 2005.13037Correlation of Phenotype with the Genotype of Egg-contaminating Salmonella Enteritidis, C.A. Morales, S. Porwllik, J.G. Frye, H. Kinde, M. McClelland, and J. Guard-Bouldin, Abstract from the ASM Conference on Integrating Metabolism and Genomics, April 30th-May 3rd 2004.13036Metabolic Differences in Yersinia pestis as a Function of Temperature and Calcium Detected by Phenotype Arrays, A.E. Holtz, I.K. Fodor, J.P. Fitch, and S.L. McCutchen-Maloney, Abstract from the 44th Annual Meeting of the American Society for Cell Biology, December 2004.13035A Plague on Many Houses, The American Society for Cell Biology Press Book 2004, p 6.13034LLNL’s Ann Holtz-Morris on Studying Y. pestis with Cellular Arrays, Inside BioAssays, Dec. 2004.13033Probing Microbial Phenotypes in Wake of Genomics Data Flood, J.F. Fox, ASM News, 2000, v.66, pp. 391-392.13032Characterization of the Escherichia coli AaeAB Efflux Pump: A Metabolic Relief Valve?, T.K. Van Dyk, L.J. Templeton, K.A. Cantera, P.L. Sharpe, and F.S. Sariaslani, Journal of Bacteriology, 2004, v. 186, pp. 7196-7204.13031Metabolomic Analysis of Escherichia coli K-12 Mutants with Deletions of 1440 Genes, M. Ito, T. Baba, H. Mori, and H. Mori, Abstract from the ASM Integrating Metabolism and Genomics Conference April 30 - May 3, 2004.13030A Novel Fermentation/Respiration Switch Protein Regulated by Enzyme IIAGlc in Escherichia coli, B.M. Koo, M.J. Yoon, C.R. Lee, T.W. Nam, Y.J. Choe, H. Jaffe, A. Peterkofsky, and Y.J Seok, The Journal of Biological Chemistry, 2004, v.279, pp. 31613-31621.13029Gene and Bacterial Identification Using High-Throughput Technologies: Genomics, Proteomics, and Phenomics, S.F. Al-Khaldi and M.M. Mossoba, Nutrition, 2004, v.20, pp. 32-38.13028Integrating High-Throughput and Computational Data Elucidates Bacterial Networks, M.W. Covert, E.M. Knight, J.L. Reed, M.J. Herrgard, and B.O. Palsson, Nature, 2004, v.429, pp. 92-96.13027Global Analysis of Predicted Proteomes: Functional Adaptation of Physical Properties, C.G. Knight, R. Kassen, H. Hebestreit, and P.B. Rainey, Proceedings of the National Academy of Sciences, 2004, v.101, pp. 8390-8395 .13026ASAP, a Systematic Annotation Package for Community Analysis of Genomes, J.D. Glasner, P. Liss, G. Plunkett III, A. Darling, T. Prasad, M. Rusch, A. Brynes, M. Gilson, B. Biehl, F.R. Blattner, and N.T. Perna, Nucleic Acids Research, 2003, v.31, pp. 147-151.13025Global Nutritional Profiling for Mutant and Chemical Mode-of-Action Analysis in Filamentous Fungi, M.M. Tanzer, H.N. Arst, A.R. Skalchunes, M. Coffin, B.A. Darveaux, R.W. Heiniger, and J.R. Shuster, Functional Integrated Genomics, 2003, v.3, pp. 160-170.13024Fast Tracking Bioprocessing Development and Optimisation, C. Gorman, Drug Plus International, 2003, v.2 pp. 6-9.13023Phenotype MicroArray Analysis of Escherichia coli K-12 Mutants with Deletions of All Two-Component Systems, L.Zhou, X.-H. Lei, B.R. Bochner, and B.L. Wanner, Journal of Bacteriology, 2003, v.185, pp. 4956-4972.13022Experimental Adaptive Radiation in Pseudomonas, R.C. MacLean and G. Bell, The American Naturalist, 2002, v.160 pp. 569-581.13021Divergent Evolution During an Experimental Adaptive Radiation, R.C. MacLean and G. Bell, Proc. Biol. Sci., 2003, v.270 pp. 1645-1650.13020New Technologies to Assess Genotype-Phenotype Relationships, B.R. Bochner, Nature Reviews Genetics, 2003, v.4 pp. 309-314.13019Phenotype MicroArrays: Their Use in Antibiotic Discovery, B.R. Bochner, Chapter 9 in Microbial Genomics and Drug Discovery, edited by T.J. Dougherty and S.J. Projan, Marcel Dekker, Inc., 2003.13018Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function, B.R. Bochner, P. Gadzinski, and E. Panomitros, Genome Research, 2001, v.11, pp. 1246-1255.13017Identification of Bacteria and Bacterial Genes: Infrared Spectroscopy, Genomics, Proteomics and Phenomics, S. Al-Khaldi and M. Mossoba, Microbiological Method Forum News, 2003, v.23, pp.1-6.13016FlhD/FlhC is a Regulator of Anaerobic Respiration and the Entner-Doudoroff Pathway through Induction of the Methyl-Accepting Chemotaxis Protein Aer, B.M. Prüß, J.W. Campbell, T.K. Van Dyk, C. Zhu, Y. Kogan, and P. Matsumura, Journal of Bacteriology, 2003, v.185, pp. 534-543.13015Next-Generation Microarray Technologies, B.J. Sedlack, Genetic Engineering News, 2003, v.23, p.20.13014Engineering a Reduced Escherichia coli Genome, V. Kolisnychenko, G. Plunkett, III, C.D. Herring, T. Feher, J. Posfai, F.R. Blattner, and G. Posfai, Genome Research, 2002, v.12, pp. 640-647.13013Carbon and Nitrogen Substrate Utilization by Archival Salmonella typhimurium LT2 Cells, B.S. Tracy, K.K. Edwards, and A. Eisenstark, BMC Evolutionary Biology, 2002, v.2, pp. 1-6.13012Regulation of Carbon Utilization by Sulfur Availability in Escherichia coli and Salmonella typhimurium, J.A. Quan, B.L. Schneider, I.T. Paulsen, M. Yamada, N.M. Kredich, and M.H. Saier, Jr., Microbiology, 2002, v.148, pp. 123-131.13011Gene Discovery and Gene Function Assignment in Filamentous Fungi, L. Hamer, K. Adachi, M.V. Montenegro-Chamorro, M.M. Tanzer, S.K. Mahanty, C. Lo, R.W. Tarpey, A.R. Skalchunes, R.W. Heiniger, S.A. Frank, B.A. Darveaux, D.J. Lampe, T.M. Slater, L. Ramamurthy, T.M. DeZwaan, G.H. Nelson, J.R. Shuster, J. Woessner, and J.E. Hamer, Proc. Natl. Acad. Sci. USA, 2001, v.9, pp. 5110-5115.13010Discovery Technologies – Intermediate Steps Follow Up On Genome Project, N. Flanagan, Genetic Engineering News, 2001, v.21, p.1.13009Proteome Chips Promise to Speed Decoding of the Human Genome, M. Downs, Small Times, 2001.13008Phenotyping Goes High Throughput with Biolog’s Phenotype MicroArrays, J. Lane, The Scientist, 2001, v.15.13007High-Throughput Cell Analytic Tool, B.R. Bochner, Drug Discovery/Technology News, 2001, v.4.13006Phenotype Arrays, A. Marshall, Nature Biotechnology, 2001, v.19, pp. 629.13005Cellular Assays to Drug Discovery, T. Mullane, Pharmaceutical Laboratory, June 2000.13004The Population Genetics of Ecological Specialization in Evolving Escherichia coli Populations, V. S. Cooper and R. E. Lenski, Nature, 2000, v.407, pp. 736-739.13003Megaplasmid pRme2011a of Sinorhizobium meliloti is Not Required for Viability, I. J. Oresnik, S. Liu, C. K. Yost, and M. F. Hynes, Journal of Bacteriology, 2000, v.182, pp. 3582-3586.13002The Consequences of Growth of a Mutator Strain of Escherichia coli as Measured by Loss of Function Among Multiple Gene Targets and Loss of Fitness, P. Funchain, A. Yeung, J. L. Stewart, R. Lin, M. M. Slupska, and J. H. Miller, Genetics Society of America, 2000, v.154, pp. 959-970.13001Diagnostic Advances: Genotypic, Phenotypic, Fast, J.F. Fox, ASM News, 2000, v.66, pp. 391-392. - Phenotype MicroArrays for Mammalian CellsBibliography of Publications on Biolog Applications
Updated April 2006 Section 14
Phenotype MicroArrays for Mammalian Cells14004Metabolic Profiling Reveals a Role for Androgen in Activating Amino Acid Metabolism and Methylation in Prostate Cancer Cells NAgireddy Putluri, et. al., PLoS One, July 2011, v. 6, pp. 1-1314003Chromosomal Instability Confers Intrinsic Multidrug Resistance Alvin J.X. Lee, David Endesfelder, Andrew J. Rowan, et. al., Cancer Research 2011, V. 71, pp. 1858-187014002Identification of Pten-loss Induced Chemo-Sensitivity Using Phenotype MicroArray Screening Adam Naguib, Dawid G. Nowak, Christopher Pratt, and Lloyd Trotman Poster - AACR CSHL14001Assay of the Multiple Energy-Producing Pathways of Mammalian Cells Barry R. Bochner, Mark Siri, Richard H Huang, Shawn Nobel, Xiang-He Lei, Paul A. Clemons, Bridget K. Wagner. PLoS One, March 2011, v. 6 pp. 1-814000Metabolic Analysis of Isogenic Cells with Altered Cancer-Related Genes Barry R. Bochner, Ben Bowen, Biolog, Inc. Hayward, CA, USA; Rob Howes, Christopher Torrance, Horizon Discovery, Cambridge, UK. Poster Session - Keystone Conference on Cancer and Metabolism, Vancouver, BC, March 2010
(Microbial ID Products Not for Human In Vitro Diagnostic Use)